PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010933290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | TCP | ||||||||
Protein Properties | Length: 246aa MW: 25620.6 Da PI: 10.526 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 126.1 | 3.8e-39 | 34 | 132 | 3 | 107 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaak 96 +kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ a s + s+s ++sa+ XP_010933290.1 34 VKKAPSKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStLATSLRHSTS-------SSSAPL 121 79******************************************************************88865555555555.......333333 PP TCP 97 skksqksaasa 107 +k+q+++++ XP_010933290.1 122 DHKPQHHPSAP 132 34444444433 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 27.992 | 39 | 93 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.4E-34 | 39 | 128 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MSGVLTGHSH QRQQMTPGNN DNGNGNGNGV PLVVKKAPSK DRHSKVDGRG RRIRMPIVCA 60 ARVFQLTREL GHKSDGQTIE WLLRQAEPSI IAATGTGTTP ASFSTLATSL RHSTSSSSAP 120 LDHKPQHHPS APFILGKRLR ADDDDDDSSA TKNGGVGMGP MGGFWAVSAR QDFGQVWSFA 180 APEMVVPPGS LSGSFAVAAQ PVGKASAARG GNYLPMVQGH LNLLASLSGS PAAASAAGRS 240 TEDEPR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010933290.1 | 1e-180 | transcription factor TCP7 | ||||
Swissprot | Q9FMX2 | 6e-77 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A2H3YDJ6 | 1e-107 | A0A2H3YDJ6_PHODC; transcription factor TCP7 | ||||
STRING | XP_008797207.1 | 1e-108 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1941 | 33 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 2e-49 | TCP family protein |