PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010932911.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

TALE

Protein Properties

Length: 669aa MW: 73657.6 Da PI: 6.2052

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010932911.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.5	2.5e-09	433	470	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gLt +qV++WF N R + XP_010932911.1 433 FEHflHPYPKDSEKLMLARQTGLTRSQVSNWFINARVR 470 554459******************************88 PP
2	BELL	124.6	4e-40	296	367	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erq+lq+k +kLl +l+eVd+rYkqy++q+q+v+ssF++ ag g+akpYt+lAl++iSrhFrcL+dai++qi XP_010932911.1 296 ERQDLQNKVTKLLAMLDEVDRRYKQYYHQMQIVVSSFDVFAGSGAAKPYTALALQTISRHFRCLRDAISGQI 367 799********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	3.0E-60	217	365	IPR006563	POX domain
Pfam	PF07526	7.0E-51	223	364	IPR006563	POX domain
PROSITE profile	PS50071	12.357	411	474	IPR001356	Homeobox domain
SMART	SM00389	5.5E-10	414	478	IPR001356	Homeobox domain
CDD	cd00086	1.35E-12	414	475	No hit	No description
SuperFamily	SSF46689	1.75E-17	415	481	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-28	417	480	IPR009057	Homeodomain-like
Pfam	PF05920	1.8E-17	431	470	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 669 aa Download sequence Send to blast
MATFYTSSTN QRDAMPNLCL WDPGHTPYPE SSVTGNMLYL NYPSSSLYSD ALAGNTQSQQ 60 NSVKLPIPSA IISQGSSVEV PNMMTSHLGE NAYNGWRDGR NEMSFMQIIG GSMNGAGDLV 120 RSSVSNNFQM GLQTQLGIVN GQDLSLQQSN VSTMQNQGLS LSLSTQIPVP SFQYRPATSD 180 LSFFGPHQSA TGNSGSCRDD DSRNKNMHPN LSAYGVSSLT NPISNSKYLK AAQELLDEVV 240 NVRKALKDKA DKSQSVHASA GTTGCKDTDG ATKSEGMPSN PQESTANSSS ELSPSERQDL 300 QNKVTKLLAM LDEVDRRYKQ YYHQMQIVVS SFDVFAGSGA AKPYTALALQ TISRHFRCLR 360 DAISGQIRAT QKSLGEQDSS INKAGGISRL RYIDQQIKQQ RAVQQFGMMQ QHAWRPQRGL 420 PESSVSVLRA WLFEHFLHPY PKDSEKLMLA RQTGLTRSQV SNWFINARVR LWKPMIEEMY 480 KEEIGDTEID SNSSSENPPR QKDEIQSSEN QDDLQSPAGE RCQTNQLNDS KSKAIHSMDM 540 GGASASFQDK TSSGDAYMNL KLNEQRPNGN DCSLLQDALT HSEGRYMAYQ TAEFGQYGNS 600 GVSLTLGLQH CDGSLPVSNG PQSFLAMRGE DIYSAAAPIG ADTADYDYIN MDDRRHRFGS 660 SHLLHDFVA

Sequence ? help Back to Top

Protein Sequence Length: 669 aa Download sequence Send to blast

MATFYTSSTN QRDAMPNLCL WDPGHTPYPE SSVTGNMLYL NYPSSSLYSD ALAGNTQSQQ  60
NSVKLPIPSA IISQGSSVEV PNMMTSHLGE NAYNGWRDGR NEMSFMQIIG GSMNGAGDLV  120
RSSVSNNFQM GLQTQLGIVN GQDLSLQQSN VSTMQNQGLS LSLSTQIPVP SFQYRPATSD  180
LSFFGPHQSA TGNSGSCRDD DSRNKNMHPN LSAYGVSSLT NPISNSKYLK AAQELLDEVV  240
NVRKALKDKA DKSQSVHASA GTTGCKDTDG ATKSEGMPSN PQESTANSSS ELSPSERQDL  300
QNKVTKLLAM LDEVDRRYKQ YYHQMQIVVS SFDVFAGSGA AKPYTALALQ TISRHFRCLR  360
DAISGQIRAT QKSLGEQDSS INKAGGISRL RYIDQQIKQQ RAVQQFGMMQ QHAWRPQRGL  420
PESSVSVLRA WLFEHFLHPY PKDSEKLMLA RQTGLTRSQV SNWFINARVR LWKPMIEEMY  480
KEEIGDTEID SNSSSENPPR QKDEIQSSEN QDDLQSPAGE RCQTNQLNDS KSKAIHSMDM  540
GGASASFQDK TSSGDAYMNL KLNEQRPNGN DCSLLQDALT HSEGRYMAYQ TAEFGQYGNS  600
GVSLTLGLQH CDGSLPVSNG PQSFLAMRGE DIYSAAAPIG ADTADYDYIN MDDRRHRFGS  660
SHLLHDFVA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-16	420	478	5	63	Homeobox protein Meis2
3k2a_B	2e-16	420	478	5	63	Homeobox protein Meis2
4xrs_A	1e-16	420	477	1	58	Homeobox protein Meis1
4xrs_B	1e-16	420	477	1	58	Homeobox protein Meis1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010932911.1	0.0	BEL1-like homeodomain protein 7
Refseq	XP_019708926.1	0.0	BEL1-like homeodomain protein 7
Refseq	XP_019708927.1	0.0	BEL1-like homeodomain protein 7
Swissprot	Q9SIW1	1e-137	BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBL	A0A2H3ZFQ4	0.0	A0A2H3ZFQ4_PHODC; BEL1-like homeodomain protein 7
STRING	XP_008812787.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP901	38	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16400.1	1e-139	BEL1-like homeodomain 7

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]