PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010932688.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | TALE | ||||||||
Protein Properties | Length: 236aa MW: 27105.7 Da PI: 7.3054 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.5 | 1.3e-09 | 164 | 198 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+++gL+++q+ +WF N+R ++ XP_010932688.1 164 KWPYPSESQKLALAQSTGLDQKQINNWFINQRKRH 198 579*****************************885 PP | |||||||
2 | ELK | 40.1 | 7.6e-14 | 118 | 139 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLgsLkqEF+ XP_010932688.1 118 ELKGQLLRKYSGYLGSLKQEFL 139 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03789 | 1.3E-10 | 118 | 139 | IPR005539 | ELK domain |
SMART | SM01188 | 1.2E-7 | 118 | 139 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.174 | 118 | 138 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.908 | 138 | 201 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.4E-13 | 140 | 205 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.13E-20 | 140 | 215 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-28 | 143 | 203 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.83E-13 | 150 | 202 | No hit | No description |
Pfam | PF05920 | 4.1E-17 | 158 | 197 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 176 | 199 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MGGLSIESLA RDCIPSRFVH NKSSSIGDSS SNLHVPIHVC HDSRAKILFL NTNGAHDSPH 60 ERCIMIIASD LILLYVNTIV ESYTPNVVYG EQLERNGSSD EEFDACENYV DPQAEDRELK 120 GQLLRKYSGY LGSLKQEFLK KRKKGKLPKE ARQQLLDWWN RHYKWPYPSE SQKLALAQST 180 GLDQKQINNW FINQRKRHWK PSEEMQFVVM DAAHPHYFMD NSLGNSFPLD CAPALL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 142 | LKQEFLKKRK |
2 | 139 | 143 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May have a role to play in formative events in ovule and embryo morphogenesis. Probably binds to the DNA sequence 5'-TGAC-3'. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029122787.1 | 1e-109 | homeobox protein knotted-1-like LET6 | ||||
Swissprot | O22299 | 2e-80 | LET6_SOLLC; Homeobox protein knotted-1-like LET6 | ||||
TrEMBL | A5H237 | 3e-92 | A5H237_ELAGV; Class I KNOX-like 1 protein | ||||
STRING | XP_008795979.1 | 1e-92 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP21073 | 5 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62360.1 | 8e-71 | KNOX/ELK homeobox transcription factor |