PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010932659.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | TALE | ||||||||
Protein Properties | Length: 452aa MW: 51370.2 Da PI: 6.5965 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.7 | 2.2e-09 | 390 | 427 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+k+gLt +q+++WF N R + XP_010932659.1 390 FEHflHPYPTDNEKIMLASKTGLTRNQISNWFINARVR 427 554459******************************88 PP | |||||||
2 | BELL | 91.6 | 7.8e-30 | 259 | 329 | 2 | 72 |
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +++ q++++kL ll+e++ rY+qy + +v+ssFe+vag g+a++Yt+l +a+SrhF +L+dai+ qi XP_010932659.1 259 KHDAQARITKLAALLDELESRYEQYFSRMDQVVSSFEVVAGTGAAASYTALTIQAMSRHFSNLRDAIVTQI 329 5789*****************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.2E-25 | 181 | 327 | IPR006563 | POX domain |
Pfam | PF07526 | 2.7E-36 | 188 | 326 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.953 | 368 | 431 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.63E-11 | 371 | 432 | No hit | No description |
SMART | SM00389 | 6.4E-10 | 371 | 435 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-27 | 376 | 437 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.14E-17 | 377 | 438 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.4E-18 | 388 | 427 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence Send to blast |
MVSQELANRS ASSVLRRCIT SDMDDHHRIH CGDLGSALYY DGKDQNDLIQ PGMPSDFQSP 60 GDQFFRLTDM LHNQRSEDSE LGRRHLMNCQ AEKGNSFHGL IYGHQNRLSL TLGSRPISDV 120 LCPNQYKQTY ANSISSNYTT ARENSEDLHP QSARHARDDC MFCDCEKTSS GNTSNPADCM 180 SCLTNAFQNS SYLKPAQELL NEVVCVSNAV ELSSNKQWRK HMTSGMTDWI SARSFQAREG 240 MNNLEANTRW TNHCSSEKKH DAQARITKLA ALLDELESRY EQYFSRMDQV VSSFEVVAGT 300 GAAASYTALT IQAMSRHFSN LRDAIVTQIH ASRESQFEDI PISQHKFSEE NTGQKGETLR 360 HLGMIQIRQV WRPLRGLPEN SVAVLRSWLF EHFLHPYPTD NEKIMLASKT GLTRNQISNW 420 FINARVRLWK PMIEEMYREE FAEDSGSSNP SS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-15 | 377 | 438 | 5 | 66 | Homeobox protein Meis2 |
3k2a_B | 2e-15 | 377 | 438 | 5 | 66 | Homeobox protein Meis2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010932651.1 | 0.0 | BEL1-like homeodomain protein 11 | ||||
Refseq | XP_010932659.1 | 0.0 | BEL1-like homeodomain protein 11 | ||||
Refseq | XP_019705289.1 | 0.0 | BEL1-like homeodomain protein 11 | ||||
Refseq | XP_019705292.1 | 0.0 | BEL1-like homeodomain protein 11 | ||||
Refseq | XP_029123254.1 | 0.0 | BEL1-like homeodomain protein 11 | ||||
TrEMBL | A0A2H3ZSB9 | 0.0 | A0A2H3ZSB9_PHODC; BEL1-like homeodomain protein 11 | ||||
STRING | XP_008794021.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16400.1 | 1e-73 | BEL1-like homeodomain 7 |