PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010932620.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | NAC | ||||||||
Protein Properties | Length: 361aa MW: 40805.5 Da PI: 5.2968 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 107.5 | 1.6e-33 | 11 | 150 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sg 81 lp+G++F+P+d+el+++ L+k +g+ ++ e+i++v+ i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r+++ + XP_010932620.1 11 LPRGVKFDPSDQELLWHLLAKVGQGDAkphpfIN--EFIPTVEegdgICYTHPQKLP-GVKQDGSVSHFFHRTFKAYNTGTRKRRKINsddlgDV 102 799************7777766665557754422..33444423335**********.677888899******************8655555588 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk+k+v+ +g++ g+kk++v+y + + +k+ekt+Wvmh+y+l XP_010932620.1 103 RWHKTGKTKPVIM-DGKHQGCKKIMVLYmsTIKGEKPEKTNWVMHQYHL 150 9************.9999**********6633667777*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.81E-39 | 3 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.371 | 11 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.2E-15 | 12 | 150 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MQHVVQEWPG LPRGVKFDPS DQELLWHLLA KVGQGDAKPH PFINEFIPTV EEGDGICYTH 60 PQKLPGVKQD GSVSHFFHRT FKAYNTGTRK RRKINSDDLG DVRWHKTGKT KPVIMDGKHQ 120 GCKKIMVLYM STIKGEKPEK TNWVMHQYHL GTGEDEKDGE YVVSKIFYQQ QSKPGDKNGQ 180 DLTLEIVEAV VAEVDPVANP KSVSSECHVG KQDPAHSPEQ TSDQVKMYHE NRVEEHNAPL 240 ECEKFDDQDN HPTGDLKWWE GESQFLLDSQ QLAEGIAICD EFLLSQSSCG GDEAKKSRPR 300 LSDYAHMGAE DLKKDLEACQ NLSNYDRSNI ELDPPQDFRL SQLEFGSQDS FLAWGGSKLA 360 D |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010932619.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
Swissprot | Q6NQK2 | 1e-127 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A3Q0I8Z9 | 0.0 | A0A3Q0I8Z9_PHODC; SUPPRESSOR OF GAMMA RESPONSE 1 isoform X3 | ||||
TrEMBL | A0A3Q0IDP6 | 0.0 | A0A3Q0IDP6_PHODC; SUPPRESSOR OF GAMMA RESPONSE 1 isoform X1 | ||||
STRING | XP_008800749.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-123 | NAC family protein |