PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010932508.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 722aa    MW: 79414.6 Da    PI: 7.0816
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010932508.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.19.8e-211671156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +++ +++t+ q++ Le++F+++++p++++r +L++ lgL+ rq+k+WFqNrR+++k
  XP_010932508.1 16 KKRYHRHTPRQIQHLEAVFKECPHPDEKQRMQLSRDLGLEPRQIKFWFQNRRTQMK 71
                    688999***********************************************998 PP
2START173.11.8e-542124353206
                     HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
           START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                     a  a++el+++++ +ep+W k      e +n +++ ++f++ +        ++ea+r+sg+v+m+++ lv  ++d++ +W e ++    ka tle
  XP_010932508.1 212 ATNALEELIRLVQTDEPLWIKPGgdrrEVLNLETYDRIFPKLGHrfkspdIRTEASRDSGLVFMNTVALVDLFMDSS-KWAEFFPtivsKARTLE 305
                     567899***************888888889999999999886669999999************************99.***************** PP

                     EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
           START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                     v+ +g      g l lm+ e+q+lsp+vp R+f f+Ry++q ++g+w+i+dvSvd  ++++  ++  R+++lpSg+li++++ng+skvtwveh++
  XP_010932508.1 306 VLVTGmagtrsGSLLLMYEEMQVLSPVVPtREFCFLRYCQQIEQGSWAIADVSVDLSRENQ-FAPPSRSRRLPSGCLIQEMPNGYSKVTWVEHME 399
                     ************************************************************9.79999**************************** PP

                     --SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 172 lkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                      ++++p h l+r lv sg a+ga++w+atlqr ce+
  XP_010932508.1 400 IEEKTPvHRLYRDLVDSGEAFGAQRWLATLQRMCER 435
                     **********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.92E-20673IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-231077IPR009057Homeodomain-like
PROSITE profilePS5007117.7671373IPR001356Homeobox domain
SMARTSM003895.2E-191477IPR001356Homeobox domain
PfamPF000462.7E-181671IPR001356Homeobox domain
CDDcd000863.49E-191674No hitNo description
PROSITE patternPS0002704871IPR017970Homeobox, conserved site
PROSITE profilePS5084851.483201438IPR002913START domain
SuperFamilySSF559611.37E-35203436No hitNo description
CDDcd088751.65E-121205434No hitNo description
SMARTSM002344.8E-46210435IPR002913START domain
PfamPF018521.4E-47213435IPR002913START domain
Gene3DG3DSA:3.30.530.203.3E-9278417IPR023393START-like domain
SuperFamilySSF559618.46E-23482714No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 722 aa     Download sequence    Send to blast
MDSGDDPDAS DGQRKKKRYH RHTPRQIQHL EAVFKECPHP DEKQRMQLSR DLGLEPRQIK  60
FWFQNRRTQM KAQHERADNC ALRAENDKIR CENIAIREAL KNVICPTCGG PPVTEDSYFD  120
EQKLRLENSR LKEELDRVSS MASRYLGRPM TQLPPVQPMP NSSLDLSVGG FGGPALGPSL  180
DLDLLTGSSS AAPFPFPTAV SDIEKPIMAN MATNALEELI RLVQTDEPLW IKPGGDRREV  240
LNLETYDRIF PKLGHRFKSP DIRTEASRDS GLVFMNTVAL VDLFMDSSKW AEFFPTIVSK  300
ARTLEVLVTG MAGTRSGSLL LMYEEMQVLS PVVPTREFCF LRYCQQIEQG SWAIADVSVD  360
LSRENQFAPP SRSRRLPSGC LIQEMPNGYS KVTWVEHMEI EEKTPVHRLY RDLVDSGEAF  420
GAQRWLATLQ RMCERFACLM ATGASSRELG GGNASSTLLV LEAKSFIVML NSKMSSVIPS  480
HEGRRSMMKL SQRMINNFCA SLSASNGNRW TTLSGLNDVG VRVTVHKSTN LGQPNGVVLS  540
AATSIWLPMS SERVFSFFKD EHTRAQWDVL SSGNSVQEVA RIVNGSHPGN CISLLRALNA  600
SQNNMLILQE SCTDASGSLV VYAPIDLPAI NIVMSGEDPS YIPLLPSGFT ILPDGRPGGG  660
GGATTSSNPM GGSSGSLITV AFQILVSSLP SAKLNVESVT TVNNLISTTV QQIKAALNCP  720
SG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019708739.10.0homeobox-leucine zipper protein ROC8
SwissprotQ69T580.0ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLA0A2H3XV660.0A0A2H3XV66_PHODC; homeobox-leucine zipper protein ROC8-like
STRINGXP_008789231.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29123770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11