PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010932454.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB | ||||||||
Protein Properties | Length: 843aa MW: 94327.4 Da PI: 8.9404 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.7 | 3.1e-14 | 445 | 487 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT++Ed +l av+ +G ++W ++a+ + gRt+ qc +rw+k XP_010932454.1 445 DWTEDEDAKLCAAVESFGDNNWQLVASNLE-GRTGAQCSNRWRK 487 6*****************************.***********98 PP | |||||||
2 | Myb_DNA-binding | 52.4 | 1.2e-16 | 497 | 541 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 grW+ +Ed++l+ av ++G ++W++Ia+ + gRt qc++rw++ XP_010932454.1 497 GRWSVDEDKRLKVAVMLFGAKNWNKIAQFAP-GRTQVQCRERWLNC 541 8******************************.***********996 PP | |||||||
3 | Myb_DNA-binding | 47.6 | 3.7e-15 | 550 | 593 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEd +l+ a++++G W+++a +++ Rt+ qc+ rw +l XP_010932454.1 550 AWTEEEDAKLLAAIAEHGYC-WSKVATCVP-PRTDSQCRRRWKVLL 593 7*****************99.*********.9**********9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 5.703 | 292 | 382 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.038 | 296 | 386 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-8 | 299 | 315 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-8 | 356 | 397 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.1E-15 | 366 | 434 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.362 | 385 | 437 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.013 | 389 | 439 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-9 | 398 | 441 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.83E-20 | 422 | 492 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.559 | 438 | 493 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-17 | 442 | 491 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-13 | 442 | 491 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-12 | 445 | 487 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.20E-12 | 446 | 489 | No hit | No description |
SuperFamily | SSF46689 | 1.27E-27 | 493 | 589 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.108 | 494 | 542 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-14 | 495 | 544 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-18 | 497 | 545 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.9E-15 | 497 | 541 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.78E-12 | 498 | 540 | No hit | No description |
PROSITE profile | PS51294 | 23.521 | 543 | 597 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-18 | 546 | 593 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-14 | 547 | 595 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.31E-13 | 550 | 593 | No hit | No description |
Pfam | PF00249 | 7.2E-14 | 550 | 593 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 843 aa Download sequence Send to blast |
MASSSSSTGS DRDEALDEDM EALRRACMLT GAKPVVVDDS DSDSGGESSS TDDIDLLHRL 60 QERFYVPSSD ADSLPFIKPL SSRPPPDSDE EDDFETLRAI QKRFTQYESD VVGRNSQNSI 120 QDTEMVVGDT TSEQETHNTL PKNGKSMVLS EELFASGFTE HAEDGACNVN IGGFMKSQFP 180 KSAKFFVDAL KKNRSCQKFI RRKLIEIEAK IEVNKELKER LQCLMDFQVA CKRKAGRILS 240 QKKDPRVRLI SMRKPTTIKD SKASYKRVSA LCLGPAENSH VSKYKMVLKT FPVSLRKQTW 300 SNMEKEKLPK GIKQQYQEML ILNSMNFESD IDSNLMSALS SSDLYITPEK IRSFIPLVNW 360 DRLASMYLTG RSGAECEARW LNCEDPMINH NPWTILEDKK LLFIVQERGV YNWIDISIAL 420 GSNRTPFQCL ARYQRSLNPH ILNKDWTEDE DAKLCAAVES FGDNNWQLVA SNLEGRTGAQ 480 CSNRWRKSLN PDRRKVGRWS VDEDKRLKVA VMLFGAKNWN KIAQFAPGRT QVQCRERWLN 540 CLDPSLNLKA WTEEEDAKLL AAIAEHGYCW SKVATCVPPR TDSQCRRRWK VLLPHEVPLL 600 QAARKMKRTV LISNFVDRES ERPTIGPNDF TPLVNFSEAE NNDSTTPGKK RSSDNQPKKS 660 RVKSRRSFKE NSTADGVTNS STNAVPTDSA LVCGINSDTA GGGSSKRSRK KKSSDDQPKK 720 LRARSRRSVK ENVAADGKVN SSADKVPSGE SLVHIVSTTT AETGRIKRTR KKTPSDDQLN 780 NSMVKSRGYC KEDIMADGMV NSSTERAPAC LSLVCSSSSS TAENGSIEGT GKRTSSDGAI 840 QEV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 1e-30 | 359 | 597 | 3 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-30 | 359 | 597 | 3 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 585 | 606 | RRRWKVLLPHEVPLLQAARKMK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010932454.1 | 0.0 | uncharacterized protein LOC105053113 isoform X1 | ||||
Refseq | XP_029122846.1 | 0.0 | uncharacterized protein LOC105053113 isoform X1 | ||||
Refseq | XP_029122847.1 | 0.0 | uncharacterized protein LOC105053113 isoform X1 | ||||
TrEMBL | A0A2H3Y5N4 | 0.0 | A0A2H3Y5N4_PHODC; uncharacterized protein LOC103709816 isoform X4 | ||||
STRING | XP_008793540.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6594 | 35 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.1 | 1e-179 | myb domain protein 4r1 |