PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010932445.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB_related | ||||||||
Protein Properties | Length: 613aa MW: 68501.7 Da PI: 6.8854 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.5 | 7.1e-09 | 498 | 546 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E ++lvd+v+++G g+W+ I r Rt ++k++w+++l XP_010932445.1 498 AWTLGEVLKLVDGVARYGAGRWSEIRRLAFasySYRTSVDLKDKWRNLL 546 7***************************999**99************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.139 | 491 | 550 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-13 | 493 | 554 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-8 | 495 | 548 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.68E-17 | 497 | 547 | No hit | No description |
SuperFamily | SSF46689 | 2.73E-16 | 497 | 556 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.7E-6 | 498 | 546 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 613 aa Download sequence Send to blast |
MGTVVDTQVD EGKDNEESDF RNIGASDPVV YQLVRVEGDG RLVPATDDEV MEVEHLLEED 60 KSGLASDEPT RHFDGCVSNE RLPSKKSDFE GLSQSENAEA DSQRLNARLE YIEVMLQKVK 120 QEERLRLSSE SLNHSTKCMD VNCQTSDGCN ETQACNDKLQ PENTSMETAP SSMVINGSCS 180 AQLGSAEACL GPANEVVMSR SSVSECTSSK PDFSILKREI CLDNLSIREL QEAFRATFGR 240 QTSVKDKLWL KRRIAMGLTN SCDVPTTSYV IKDNKRVHKE MKEEPSRLQK SQTEAGSLSM 300 DPVNDLTINN SQNLPSSPTD QTEDQQVYSK RLRKPLCEDD EKNENLQMEQ FAGKRVRKPT 360 RRYIEELSEF ETRECTAKLL SSVKNSGHCQ SSPKSRIRPV HDIGSQGISF ATRQDSLGGL 420 GIQVPFVSRV RRGRPRKNLA TLMNFVDERG KRDVETINGD EEQYLRLEKF DAAGDNTDDN 480 ADSRPLLKGG VRRKHHRAWT LGEVLKLVDG VARYGAGRWS EIRRLAFASY SYRTSVDLKD 540 KWRNLLRASL AHGPTDKGAK NSRKHASIPI PTNILSRVRE LAEMHSQTGI ELGPSKITGR 600 GGRIVQEKGS GFL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 430 | 436 | RRGRPRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029122843.1 | 0.0 | uncharacterized protein LOC105053107 isoform X4 | ||||
TrEMBL | A0A2H3XIE8 | 0.0 | A0A2H3XIE8_PHODC; uncharacterized protein LOC103703273 isoform X5 | ||||
STRING | XP_008784279.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.2 | 1e-113 | TRF-like 6 |