PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010932444.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 623aa    MW: 69797.6 Da    PI: 8.8964
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010932444.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.2e-09508556348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E ++lvd+v+++G g+W+ I r        Rt  ++k++w+++l
   XP_010932444.1 508 AWTLGEVLKLVDGVARYGAGRWSEIRRLAFasySYRTSVDLKDKWRNLL 556
                      7***************************999**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.139501560IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.7E-13503564IPR009057Homeodomain-like
SMARTSM007171.4E-8505558IPR001005SANT/Myb domain
CDDcd116602.75E-17507557No hitNo description
SuperFamilySSF466892.81E-16507566IPR009057Homeodomain-like
PfamPF002491.7E-6508556IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MVEGDGRLVP ATDDEVMEVE HLLEEDKSGL ASDEPTRHFD GCVSNERLPS KKSDFEGLSQ  60
SENAEADSQR LNARLEYIEV MLQKVKQEER LRLSSESLNH STKCMDVNCQ TSDGCNETQA  120
CNDKLQPENT SMETAPSSMV INGSCSAQLG SAEACLGPAN EVVMSRSSVS ECTSSKPDFS  180
ILKREICLDN LSIRELQEAF RATFGRQTSV KDKLWLKRRI AMGLTNSCDV PTTSYVIKDN  240
KRVHKEMKEE PSRLQKSQTE AGSLSMDPVN DLTINNSQNL PSSPTDQTED QQVYSKRLRK  300
PLCEDDEKNE NLQMEQFAGK RVRKPTRRYI EELSEFETRE CTAKLLSSVK NSGHCQSSPK  360
SRIRPVHDIG SQGISFATRQ DSLGGLGIQV PFVSRVRRGR PRKNLATLMK YHPSGIASNR  420
VRKALRIPAM QQNTESGSRL RKARALPMYI PQRNFVDERG KRDVETINGD EEQYLRLEKF  480
DAAGDNTDDN ADSRPLLKGG VRRKHHRAWT LGEVLKLVDG VARYGAGRWS EIRRLAFASY  540
SYRTSVDLKD KWRNLLRASL AHGPTDKGAK NSRKHASIPI PTNILSRVRE LAEMHSQTGI  600
ELGPSKITGR GGRIVQEKGS GFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1396402RRGRPRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010932437.10.0uncharacterized protein LOC105053107 isoform X1
RefseqXP_010932438.10.0uncharacterized protein LOC105053107 isoform X1
RefseqXP_010932439.10.0uncharacterized protein LOC105053107 isoform X1
RefseqXP_010932440.10.0uncharacterized protein LOC105053107 isoform X1
RefseqXP_029122838.10.0uncharacterized protein LOC105053107 isoform X1
RefseqXP_029122839.10.0uncharacterized protein LOC105053107 isoform X1
RefseqXP_029122840.10.0uncharacterized protein LOC105053107 isoform X1
TrEMBLA0A2H3XIJ20.0A0A2H3XIJ2_PHODC; uncharacterized protein LOC103703273 isoform X1
TrEMBLA0A2H3XIS20.0A0A2H3XIS2_PHODC; uncharacterized protein LOC103703273 isoform X2
STRINGXP_008784279.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-112TRF-like 6