PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010932443.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB_related | ||||||||
Protein Properties | Length: 646aa MW: 72171.9 Da PI: 8.2466 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.4 | 7.6e-09 | 531 | 579 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E ++lvd+v+++G g+W+ I r Rt ++k++w+++l XP_010932443.1 531 AWTLGEVLKLVDGVARYGAGRWSEIRRLAFasySYRTSVDLKDKWRNLL 579 7***************************999**99************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.139 | 524 | 583 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.0E-13 | 526 | 587 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-8 | 528 | 581 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.56E-17 | 530 | 580 | No hit | No description |
SuperFamily | SSF46689 | 2.96E-16 | 530 | 589 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.8E-6 | 531 | 579 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 646 aa Download sequence Send to blast |
MGTVVDTQVD EGKDNEESDF RNIGASDPVV YQLVRVEGDG RLVPATDDEV MEVEHLLEED 60 KSGLASDEPT RHFDGCVSNE RLPSKKSDFE GLSQSENAEA DSQRLNARLE EERLRLSSES 120 LNHSTKCMDV NCQTSDGCNE TQACNDKLQP ENTSMETAPS SMVINGSCSA QLGSAEACLG 180 PANEVVMSRS SVSECTSSKP DFSILKREIC LDNLSIRELQ EAFRATFGRQ TSVKDKLWLK 240 RRIAMGLTNS CDVPTTSYVI KDNKRVHKEM KEEPSRLQKS QTEAGSLSMD PVNDLTINNS 300 QNLPSSPTDQ TEDQQVYSKR LRKPLCEDDE KNENLQMEQF AGKRVRKPTR RYIEELSEFE 360 TRECTAKLLS SVKNSGHCQS SPKSRIRPVH DIGSQGISFA TRQDSLGGLG IQVPFVSRVR 420 RGRPRKNLAT LMKYHPSGIA SNRVRKALRI PAMQQNTESG SRLRKARALP MYIPQRNFVD 480 ERGKRDVETI NGDEEQYLRL EKFDAAGDNT DDNADSRPLL KGGVRRKHHR AWTLGEVLKL 540 VDGVARYGAG RWSEIRRLAF ASYSYRTSVD LKDKWRNLLR ASLAHGPTDK GAKNSRKHAS 600 IPIPTNILSR VRELAEMHSQ TGIELGPSKI TGRGGRIVQE KGSGFL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 419 | 425 | RRGRPRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029122842.1 | 0.0 | uncharacterized protein LOC105053107 isoform X3 | ||||
TrEMBL | A0A2H3XIF9 | 0.0 | A0A2H3XIF9_PHODC; uncharacterized protein LOC103703273 isoform X3 | ||||
STRING | XP_008784279.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 1e-108 | TRF-like 6 |