PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010932441.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 650aa    MW: 72674.5 Da    PI: 8.246
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010932441.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.47.6e-09535583348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E ++lvd+v+++G g+W+ I r        Rt  ++k++w+++l
   XP_010932441.1 535 AWTLGEVLKLVDGVARYGAGRWSEIRRLAFasySYRTSVDLKDKWRNLL 583
                      7***************************999**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.139528587IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.1E-13530591IPR009057Homeodomain-like
SMARTSM007171.4E-8532585IPR001005SANT/Myb domain
SuperFamilySSF466892.96E-16534593IPR009057Homeodomain-like
CDDcd116602.75E-17534584No hitNo description
PfamPF002491.8E-6535583IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MGTVVDTQVD EGKDNEESDF RNIGASDPVE GDGRLVPATD DEVMEVEHLL EEDKSGLASD  60
EPTRHFDGCV SNERLPSKKS DFEGLSQSEN AEADSQRLNA RLEYIEVMLQ KVKQEERLRL  120
SSESLNHSTK CMDVNCQTSD GCNETQACND KLQPENTSME TAPSSMVING SCSAQLGSAE  180
ACLGPANEVV MSRSSVSECT SSKPDFSILK REICLDNLSI RELQEAFRAT FGRQTSVKDK  240
LWLKRRIAMG LTNSCDVPTT SYVIKDNKRV HKEMKEEPSR LQKSQTEAGS LSMDPVNDLT  300
INNSQNLPSS PTDQTEDQQV YSKRLRKPLC EDDEKNENLQ MEQFAGKRVR KPTRRYIEEL  360
SEFETRECTA KLLSSVKNSG HCQSSPKSRI RPVHDIGSQG ISFATRQDSL GGLGIQVPFV  420
SRVRRGRPRK NLATLMKYHP SGIASNRVRK ALRIPAMQQN TESGSRLRKA RALPMYIPQR  480
NFVDERGKRD VETINGDEEQ YLRLEKFDAA GDNTDDNADS RPLLKGGVRR KHHRAWTLGE  540
VLKLVDGVAR YGAGRWSEIR RLAFASYSYR TSVDLKDKWR NLLRASLAHG PTDKGAKNSR  600
KHASIPIPTN ILSRVRELAE MHSQTGIELG PSKITGRGGR IVQEKGSGFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1423429RRGRPRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010932441.10.0uncharacterized protein LOC105053107 isoform X2
RefseqXP_029122841.10.0uncharacterized protein LOC105053107 isoform X2
TrEMBLA0A2H3XIS20.0A0A2H3XIS2_PHODC; uncharacterized protein LOC103703273 isoform X2
STRINGXP_008784279.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-111TRF-like 6