PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010932438.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 657aa    MW: 73532.6 Da    PI: 8.3586
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010932438.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.47.7e-09542590348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E ++lvd+v+++G g+W+ I r        Rt  ++k++w+++l
   XP_010932438.1 542 AWTLGEVLKLVDGVARYGAGRWSEIRRLAFasySYRTSVDLKDKWRNLL 590
                      7***************************999**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.139535594IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.1E-13537598IPR009057Homeodomain-like
SMARTSM007171.4E-8539592IPR001005SANT/Myb domain
SuperFamilySSF466893.04E-16541600IPR009057Homeodomain-like
CDDcd116602.72E-17541591No hitNo description
PfamPF002491.8E-6542590IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MGTVVDTQVD EGKDNEESDF RNIGASDPVV YQLVRVEGDG RLVPATDDEV MEVEHLLEED  60
KSGLASDEPT RHFDGCVSNE RLPSKKSDFE GLSQSENAEA DSQRLNARLE YIEVMLQKVK  120
QEERLRLSSE SLNHSTKCMD VNCQTSDGCN ETQACNDKLQ PENTSMETAP SSMVINGSCS  180
AQLGSAEACL GPANEVVMSR SSVSECTSSK PDFSILKREI CLDNLSIREL QEAFRATFGR  240
QTSVKDKLWL KRRIAMGLTN SCDVPTTSYV IKDNKRVHKE MKEEPSRLQK SQTEAGSLSM  300
DPVNDLTINN SQNLPSSPTD QTEDQQVYSK RLRKPLCEDD EKNENLQMEQ FAGKRVRKPT  360
RRYIEELSEF ETRECTAKLL SSVKNSGHCQ SSPKSRIRPV HDIGSQGISF ATRQDSLGGL  420
GIQVPFVSRV RRGRPRKNLA TLMKYHPSGI ASNRVRKALR IPAMQQNTES GSRLRKARAL  480
PMYIPQRNFV DERGKRDVET INGDEEQYLR LEKFDAAGDN TDDNADSRPL LKGGVRRKHH  540
RAWTLGEVLK LVDGVARYGA GRWSEIRRLA FASYSYRTSV DLKDKWRNLL RASLAHGPTD  600
KGAKNSRKHA SIPIPTNILS RVRELAEMHS QTGIELGPSK ITGRGGRIVQ EKGSGFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1430436RRGRPRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010932437.10.0uncharacterized protein LOC105053107 isoform X1
RefseqXP_010932438.10.0uncharacterized protein LOC105053107 isoform X1
RefseqXP_010932439.10.0uncharacterized protein LOC105053107 isoform X1
RefseqXP_010932440.10.0uncharacterized protein LOC105053107 isoform X1
RefseqXP_029122838.10.0uncharacterized protein LOC105053107 isoform X1
RefseqXP_029122839.10.0uncharacterized protein LOC105053107 isoform X1
RefseqXP_029122840.10.0uncharacterized protein LOC105053107 isoform X1
TrEMBLA0A2H3XIJ20.0A0A2H3XIJ2_PHODC; uncharacterized protein LOC103703273 isoform X1
STRINGXP_008784279.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-118TRF-like 6