PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010932429.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

MYB

Protein Properties

Length: 278aa MW: 31611.6 Da PI: 6.2587

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010932429.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.4	2.9e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++ Ed++l d++k +G g+W +I+++ g++R++ +c++rw++yl XP_010932429.1 14 KGPWSAMEDKILTDYIKAHGEGRWGKIPKRAGLNRCGRSCRLRWLNYL 61 79********************************************97 PP
2	Myb_DNA-binding	51.9	1.7e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + eE++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l XP_010932429.1 67 RGNISHEEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTVL 112 78999***************.*****.**********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.727	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.95E-29	12	108	IPR009057	Homeodomain-like
SMART	SM00717	5.1E-15	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	4.2E-15	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.9E-23	15	68	IPR009057	Homeodomain-like
CDD	cd00167	1.08E-10	16	61	No hit	No description
PROSITE profile	PS51294	26.397	62	116	IPR017930	Myb domain
SMART	SM00717	2.1E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	7.3E-15	67	112	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.8E-25	69	116	IPR009057	Homeodomain-like
CDD	cd00167	2.17E-11	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MVRSQCGSEE GLNKGPWSAM EDKILTDYIK AHGEGRWGKI PKRAGLNRCG RSCRLRWLNY 60 LRPDIKRGNI SHEEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT VLKKKVQARS 120 VPLTNLKCLN HDEKERKSKS KTEVQAPPFE NPARRSEAEL SSNHYGNQNV HKNEKAIMID 180 DLAPESSSLA PQDYDLWNLL AGFNTDSLCL LDFEFVELLG DNIQQDIEDC NNGKLCAFFD 240 ENIFCSRGMF ENGIGTDQIQ SYGSLDLGSL ATFFESES

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	3e-28	12	116	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029122837.1	1e-172	transcription factor MYB23
TrEMBL	A0A2H3XIT2	1e-162	A0A2H3XIT2_PHODC; transcription factor MYB23-like
STRING	XP_008784295.1	1e-163	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP25480	3	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	9e-57	myb domain protein 5