PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010932428.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB | ||||||||
Protein Properties | Length: 273aa MW: 31344.7 Da PI: 8.1486 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.7 | 1.1e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +l+ ++k +G g+W++ +++ g++R++k+c++rw++yl XP_010932428.1 14 RGAWTAEEDRILKAYIKNHGEGRWRSLPKKAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.6 | 2.2e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T eE++l+++++++lG++ W++Ia +++ gRt++++k++w++ XP_010932428.1 67 RGNITHEEEDLIIRLHNLLGNK-WSLIAGRLP-GRTDNEIKNYWNTC 111 7999******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.375 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.87E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-24 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.35E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.068 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 4.4E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.7E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-25 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.46E-10 | 71 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MGRKPCCSRE DINRGAWTAE EDRILKAYIK NHGEGRWRSL PKKAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI THEEEDLIIR LHNLLGNKWS LIAGRLPGRT DNEIKNYWNT CLRKKVQGQH 120 QLKRCQPPTN ETPLLVRTKA IRCAKLFITP QQHIAQNQEG NVAIEPAMIG EMATSKAPNS 180 ESGKHSSFTP EEDTWWDVLV GLDKGNVSPL EAPDFDFMRL CGSESPSNYY TRREDFKRVF 240 EEMSDTTLPD FELELKSLAN FLDCEEGWLG GDL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-26 | 11 | 116 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010932428.1 | 0.0 | transcription factor TT2-like | ||||
Swissprot | Q9FJA2 | 8e-62 | TT2_ARATH; Transcription factor TT2 | ||||
TrEMBL | A0A2H3XIG8 | 1e-158 | A0A2H3XIG8_PHODC; transcription factor TT2-like isoform X2 | ||||
STRING | XP_008784296.1 | 1e-156 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 3e-64 | MYB family protein |