PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010932344.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 554aa    MW: 59194.5 Da    PI: 6.4566
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010932344.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.6e-11354399555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h+++Er RR++i +++ +L+el+P++      K +Ka++L + ++Y+k Lq
  XP_010932344.1 354 HSIAERVRREKIAERMKNLQELVPNS-----NKADKASMLDEIIDYVKFLQ 399
                     99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-16347409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.63E-12347403No hitNo description
PROSITE profilePS5088816.984349398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-16351408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-8354399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-13355404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MDDFTDRFLS SQTWPDANTS ARSSWVGTAV SQTTSLLAGS LEAYGDGKNP PICVIPSSHI  60
IGNACTEDLN LQSHDSTSSF FVHGNTTYGI DKGMFPGEKL SMHKLHRENS QPSLQDNMTQ  120
ESGFSLLGVI ESNLTAGTFG SDLNPSCSVA FPHSSLTVST SIESNGGELS AFTQSLGDAH  180
SISSLPLMWP SSYTGVSSLM GQGRLQACGF QELESDNVIL RKTCVENGKF AQLDDLPAAS  240
VHEHNELHNP NFPSFSGGQQ IKMIGGDSQQ QERNGLHHLC LPSLASRPQM SSTKTAGIQM  300
CQQLPPSTEG NTSKHHMNHS SSTQTQSTPS NAGGCNEAVK PRVRARRGQA TDPHSIAERV  360
RREKIAERMK NLQELVPNSN KADKASMLDE IIDYVKFLQL QVKVLSMSRL GAAGAVVPLL  420
TDSQAEGNLL LLASPSVVLG TDLSESQDSL AFEQEVVKLM ESNVTMAMQY LQTKGLCLMP  480
IALATAISGQ KGSSSSAIPP DRRKPDVSHG VICPSNQCIM ERTGSEDGPN GCNGPVVKGA  540
QKPVGNAKML KPKA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019708933.10.0LOW QUALITY PROTEIN: uncharacterized protein LOC105053039
TrEMBLA0A2H3XIR60.0A0A2H3XIR6_PHODC; uncharacterized protein LOC103703328
STRINGXP_008784365.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.11e-60LJRHL1-like 3