PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010932292.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARR-B
Protein Properties Length: 603aa    MW: 68311.2 Da    PI: 5.0591
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010932292.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like81.68.8e-26199252155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+gLt+e+v+SHLQkYRl
  XP_010932292.1 199 KARVVWSVDLHQKFVNAVNQI-GFDKVGPKKILDLMNVPGLTRENVASHLQKYRL 252
                     68*******************.9*******************************8 PP
2Response_reg76.78.5e-26191271109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vdD+p+ +++l+++l+k  y ev+++  ++ ale+l+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ G
  XP_010932292.1  19 VLVVDDDPTWLKILEKMLRKCSY-EVTTCGLARFALEMLRERKdhFDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSIDGETSRVMKGVQHG 111
                     89*********************.***************777777**********************6644.8********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ ++el +
  XP_010932292.1 112 ACDYLLKPVRMKELKN 127
                     ************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.2E-1581593IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23002.4E-4316153No hitNo description
SuperFamilySSF521722.7E-3416141IPR011006CheY-like superfamily
SMARTSM004481.2E-3017129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.56718133IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.6E-2319127IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.26E-2820132No hitNo description
PROSITE profilePS512949.161196255IPR017930Myb domain
SuperFamilySSF466893.49E-18196256IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-28198257IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-22199252IPR006447Myb domain, plants
PfamPF002499.6E-8201251IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MENLSASSRT EAFPVGLRVL VVDDDPTWLK ILEKMLRKCS YEVTTCGLAR FALEMLRERK  60
DHFDIVISDV NMPDMDGFKL LEHVGLEMDL PVIMMSIDGE TSRVMKGVQH GACDYLLKPV  120
RMKELKNIWQ HVYRKKMQEV KEIEGHDINE DIQIRNEFED FEDRHVLNGT DMNSMRKRKD  180
VDNKEHADQE FTDPATVKKA RVVWSVDLHQ KFVNAVNQIG FDKVGPKKIL DLMNVPGLTR  240
ENVASHLQKY RLYLSRLQKQ NEGRNFGGNM QSDFSSKDVT ANFDLHSSTQ MQQNGASSKY  300
IYTNQKIPAQ VIVPDGCADD FKNVVSLQVM DSKQALLSDV SDSQKVNSVS QLGVLLSFKE  360
MMPIVDMKPL EPAISRHQSW NGGIPVMQFM QYPKHNHKRC SLLEDYSCLP KPDQEHQVFA  420
DHVHTPPSVI SVTCNTEDDM CSVSELKPVH TNQKSSHIKP ISPVPFMTNP VSVQVDSGLS  480
NTQDYSGLSN TQDFGATCGK DGSTNQKDHY NDQTCSGWIP PPLQLSLTNE TDLVSLPEQL  540
QLCSLQGIGC FENVGLNNME IFQYNDSTSA IEVHGNWYDS LEFNCDYLYD SADYPIVDEC  600
LFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-17198257463ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010932292.10.0two-component response regulator ORR26
SwissprotQ5N6V80.0ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLA0A2H3YK860.0A0A2H3YK86_PHODC; Two-component response regulator
STRINGXP_008799983.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59003752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-123response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]