PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010932155.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family SBP
Protein Properties Length: 1093aa    MW: 120263 Da    PI: 7.3455
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010932155.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.55.9e-41166243178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +Cqv++C+adls+ak+yhrrhkvCevhsk++++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+
  XP_010932155.1 166 MCQVDDCRADLSNAKDYHRRHKVCEVHSKTTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 243
                     6**************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.4E-34160228IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.077164241IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.94E-38165245IPR004333Transcription factor, SBP-box
PfamPF031101.2E-29167240IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.201.9E-4484516IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.9E-4883979IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.53E-5897977IPR020683Ankyrin repeat-containing domain
CDDcd002047.18E-6899978No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1093 aa     Download sequence    Send to blast
MEGQVGAQVA HPVFFHQPLP DQFHEAAALG KKRDFPWQGP AFHHGQQQQR LMGASLLPNN  60
NHPGGGWNPK MWDWDSLNFA AKPSADGSDV VYLGTQPAAV TAEVEQRKKG EESSKGPTLG  120
KGLEEDGENL TLKLGGANYT ASEEPVARPN KRVRSGSPGS GGSYPMCQVD DCRADLSNAK  180
DYHRRHKVCE VHSKTTKALV GKQMQRFCQQ CSRFHPLSEF DEGKRSCRRR LAGHNRRRRK  240
TQPEDVSSRL LLPGNQENAT NGNSDIANLL AILARLQGNN AGKPASLPPL PDRDRLIQFL  300
SKINNLNTAN TSSRLPISGG IDLNVSQASQ QGSLEQTPKG NGNPNVPSTM NLLAVLSAAL  360
AASASEAIAS LSQGSSDNSG SDKTKIQCAE PATDVNSHSK LTRTFPSVGV VRTNCIGQYP  420
TEVPDQPVQE ARPSLPLQLF GPAEDDSPPK LGSAIKYLSS ESSNPMEERS PSSSPPVTQK  480
LFPLHSAEES MKHARMSNCR EDNATVELST SHGWNAPFEL FKDSQRRVDN GIVQNHPYQA  540
GYTSSSGSDH SPSSSNSDAQ DRTGRIIFKL FDKDPSNFPG TLRNQILNWL SHSPSEMESY  600
IRPGCVVLSV YLSMPLIAWD KLEEDLLRRV ASLVQCSESE FWRNGRFLVR TSRQLVSHKD  660
GKIHLCKSWR TWSAPELTSV SPVAVVGGQE TSLVLKGRNL TVPGTKIHCT YMGKYTSKEV  720
LCSAYPGTIY DDSSVETFDF PGGSPKIFGR CFIEVENGFK GNSFPVIIAD ARICQELRVL  780
ESEFDEDVQT EDQVQENGQP RSREDVLHFL NELGWLFQRT NTSSAPSSPD FSITRFKYLL  840
TFSVERDWCA LIKTLLDILA ERSSRSDAQS QEALEMLVEI HLLNRAVKRR CRKMIDLLLH  900
YSVSHGNDDK SIYLFPPNLP GPGGLTPLHL AASLEDSEGM VDALTSDPQE IGLNCWDSLR  960
DDGGQSPYMY ATMRNNHSYN SLVGRKLADR KNGQVSISVA NEDISLHKSW ITGEEDRPVA  1020
QPPQARPCGR CALAGAGWLG RTPRTRGLLE RPYVHSMLAI AAVCVCVCLF LRGSPQIGSV  1080
APFKWENLDF GPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-31156240184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1884889RAVKRR
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00155DAPTransfer from AT1G20980Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010932155.10.0squamosa promoter-binding-like protein 15 isoform X1
RefseqXP_010932156.10.0squamosa promoter-binding-like protein 15 isoform X1
SwissprotA2YX040.0SPL15_ORYSI; Squamosa promoter-binding-like protein 15
SwissprotQ6Z8M80.0SPL15_ORYSJ; Squamosa promoter-binding-like protein 15
TrEMBLA0A2H3ZU480.0A0A2H3ZU48_PHODC; squamosa promoter-binding-like protein 15
STRINGXP_008799143.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54563853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.10.0squamosa promoter binding protein-like 14