PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010932083.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

HB-other

Protein Properties

Length: 1212aa MW: 136980 Da PI: 8.5146

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010932083.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	41.7	1.9e-13	17	67	7	57
--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ ql+ Le+l+ ++yp++++ ee A +l+Lt +q+++WF rR kekk XP_010932083.1 17 KTQAQLQSLEKLYSDEKYPKQKAVEEYAVSLNLTYNQIRTWFVERRRKEKK 67 599***********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.4E-13	6	70	IPR009057	Homeodomain-like
SMART	SM00389	7.7E-11	9	72	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.71E-12	14	69	IPR009057	Homeodomain-like
CDD	cd00086	7.22E-10	16	69	No hit	No description
Pfam	PF00046	9.4E-11	17	67	IPR001356	Homeobox domain
PROSITE profile	PS50071	13.928	18	68	IPR001356	Homeobox domain
SMART	SM00571	3.2E-5	414	473	IPR018501	DDT domain
PROSITE profile	PS50827	10.447	414	473	IPR018501	DDT domain
Pfam	PF02791	1.0E-8	416	468	IPR018501	DDT domain
Pfam	PF15612	4.8E-8	697	738	IPR028942	WHIM1 domain
Pfam	PF15613	5.0E-10	840	912	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1212 aa Download sequence Send to blast
MANDDSNVKK DNGTKKKTQA QLQSLEKLYS DEKYPKQKAV EEYAVSLNLT YNQIRTWFVE 60 RRRKEKKENE ALSKLKSSEV VELESDQSND IAFFADGRHV RQKDKHSAPI MHRTNISGHS 120 SNQLVRRKDS WKILGQHMNN SVAGRMQCAE KKHLICLQVL FSKDYILKKV FRKDGPPLGA 180 EFDPPGNVLS CHTGSRKGQN LQSCRDSERS LKKRKVLESP MLDPITSRER NVLERKFGIG 240 KGLMTVWHAT NSGSGKFPTG IDFVNGSAAW MPFKSNASFR KVMCQFSKGM QQRGQRQNTS 300 RKKIQEKRKL PIRKRKVPCG KDVDQKKPHP TECKLSLDEL KSLEQSNALT VLVDDEELEL 360 RELQAGPNPL RCSAHLASSG RHGCPLCKDL LARFPPQSVK MKPPLCIRPW DSSPELVKKL 420 FKVLRFLYTH CATINVCPFT LDELAQAFHD KDSFLLGKIH VALLKLLLLA VEREIAAGFI 480 CRAFKDCRFL GFLNFVREQE LDVNFWSRSL SPLTWTEILR QVLVAAGYGS KQNTMKRQIF 540 SKDRNRMAKY GLHPRTLKGA LFTLLYKQGT GGLKVSELAR TSEIVDLDLP HTKEELEQLI 600 RSTLSSDITL FEKIGPSAFR LRVDPHVKGK EDLLSDTEDS GSVDDDSVDA SSSNDDSDDS 660 KEINSAVRER QIIKYKAWQK KTGQEVAKCT EIDESYSGEA WVLGLMEGEY SDLSIEEKLN 720 ALAALVDLVG AGSILRTEEP VRAISVIPST RSHGSGAKIK KSSTNNHLLS QASWEGLAHN 780 VEETHSLPVS CPTDFSATFL KTTKKGQSSV NANEHHPGVS RRKNAEPMGE PGQVMHPLQS 840 IYLGSDRRYN SYWLFLGPCT VDDPGHRRVY FESSEDGHWG VIDTSQVLHT LCSVLDGRGT 900 REARLLASLE KRESFLCQAM DGYITDEIRI RQTRRSDPSD LDTNGGDGSS PISDIDNVMI 960 PTESTENLLA ASGAIILEVG KGAEDRKQKW ERLQAFDKWI WSSFYSNLNS VKYSKRSYME 1020 SLARCESCHD LYWRDEKHCK ICHATFEIDF DLEERYAIHV ATCREMEDTS DSEYPNHKVL 1080 PSQLQALKAA IHAIEMNMPV AALANTWTSS AHKLWVKRLR RTSSMPELLQ VLVDFVGAIN 1140 EEWLYECASA WGSNMALDDI IVYFQTMPQT TSAVALWMVK LDSLIAPYLE RVQSERRLSN 1200 MLQLQRSGAC TR

Sequence ? help Back to Top

Protein Sequence Length: 1212 aa Download sequence Send to blast

MANDDSNVKK DNGTKKKTQA QLQSLEKLYS DEKYPKQKAV EEYAVSLNLT YNQIRTWFVE  60
RRRKEKKENE ALSKLKSSEV VELESDQSND IAFFADGRHV RQKDKHSAPI MHRTNISGHS  120
SNQLVRRKDS WKILGQHMNN SVAGRMQCAE KKHLICLQVL FSKDYILKKV FRKDGPPLGA  180
EFDPPGNVLS CHTGSRKGQN LQSCRDSERS LKKRKVLESP MLDPITSRER NVLERKFGIG  240
KGLMTVWHAT NSGSGKFPTG IDFVNGSAAW MPFKSNASFR KVMCQFSKGM QQRGQRQNTS  300
RKKIQEKRKL PIRKRKVPCG KDVDQKKPHP TECKLSLDEL KSLEQSNALT VLVDDEELEL  360
RELQAGPNPL RCSAHLASSG RHGCPLCKDL LARFPPQSVK MKPPLCIRPW DSSPELVKKL  420
FKVLRFLYTH CATINVCPFT LDELAQAFHD KDSFLLGKIH VALLKLLLLA VEREIAAGFI  480
CRAFKDCRFL GFLNFVREQE LDVNFWSRSL SPLTWTEILR QVLVAAGYGS KQNTMKRQIF  540
SKDRNRMAKY GLHPRTLKGA LFTLLYKQGT GGLKVSELAR TSEIVDLDLP HTKEELEQLI  600
RSTLSSDITL FEKIGPSAFR LRVDPHVKGK EDLLSDTEDS GSVDDDSVDA SSSNDDSDDS  660
KEINSAVRER QIIKYKAWQK KTGQEVAKCT EIDESYSGEA WVLGLMEGEY SDLSIEEKLN  720
ALAALVDLVG AGSILRTEEP VRAISVIPST RSHGSGAKIK KSSTNNHLLS QASWEGLAHN  780
VEETHSLPVS CPTDFSATFL KTTKKGQSSV NANEHHPGVS RRKNAEPMGE PGQVMHPLQS  840
IYLGSDRRYN SYWLFLGPCT VDDPGHRRVY FESSEDGHWG VIDTSQVLHT LCSVLDGRGT  900
REARLLASLE KRESFLCQAM DGYITDEIRI RQTRRSDPSD LDTNGGDGSS PISDIDNVMI  960
PTESTENLLA ASGAIILEVG KGAEDRKQKW ERLQAFDKWI WSSFYSNLNS VKYSKRSYME  1020
SLARCESCHD LYWRDEKHCK ICHATFEIDF DLEERYAIHV ATCREMEDTS DSEYPNHKVL  1080
PSQLQALKAA IHAIEMNMPV AALANTWTSS AHKLWVKRLR RTSSMPELLQ VLVDFVGAIN  1140
EEWLYECASA WGSNMALDDI IVYFQTMPQT TSAVALWMVK LDSLIAPYLE RVQSERRLSN  1200
MLQLQRSGAC TR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	60	65	RRRKEK
2	60	67	RRRKEKKE
3	300	315	RKKIQEKRKLPIRKRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010932083.1	0.0	homeobox-DDT domain protein RLT3
TrEMBL	A0A2H3ZH97	0.0	A0A2H3ZH97_PHODC; homeobox-DDT domain protein RLT3
STRING	XP_008813491.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4556	33	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	0.0	Homeodomain-like transcriptional regulator