PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010932028.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 260aa    MW: 30040.6 Da    PI: 10.6666
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010932028.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13e-161562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd ll ++++++G g W+ ++++ g++R++k c++rw++yl
   XP_010932028.1 15 KGAWSEEEDRLLRKCIEKYGEGKWRHVPQMAGLRRCRKRCRLRWLNYL 62
                     79********************************************97 PP
2Myb_DNA-binding45.71.5e-1471113448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      + +eE +l+v+++k+lG++ W++I  +++ gRt++++k++w+++l
   XP_010932028.1  71 FAEEETDLIVKLHKLLGNR-WSLIVGRLP-GRTANDIKNYWNTHL 113
                      679****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.4E-21864IPR009057Homeodomain-like
PROSITE profilePS5129427.0891066IPR017930Myb domain
SuperFamilySSF466892.7E-2712109IPR009057Homeodomain-like
SMARTSM007171.8E-131464IPR001005SANT/Myb domain
PfamPF002491.3E-151562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-2065117IPR009057Homeodomain-like
SMARTSM007175.3E-1367115IPR001005SANT/Myb domain
PROSITE profilePS5129417.95367117IPR017930Myb domain
PfamPF002491.0E-1270113IPR001005SANT/Myb domain
CDDcd001673.18E-973113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MGNLRAEVQR PGVRKGAWSE EEDRLLRKCI EKYGEGKWRH VPQMAGLRRC RKRCRLRWLN  60
YLRRRINRAT FAEEETDLIV KLHKLLGNRW SLIVGRLPGR TANDIKNYWN THLGKKVEVE  120
NKKAQPRADA RVIKPRPWRV PLQWIWSRDQ QSFGSQHQQK ELGIPELPTT LGNDEAWLNS  180
IINGDGENSA MPDIGNVNTM NLQNGFGIGE LEENRDGALF MEGEACLLTR KVEVSPYVRV  240
NCREALKRTG IGLLKIKKKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-22111193110B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15064RKRCRLRWLNYLRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010932028.10.0transcription factor MYB1-like
TrEMBLA0A068FIV31e-133A0A068FIV3_ELAGV; Virescens R2R3-MYB
STRINGXP_008804377.11e-95(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2550025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-44myb domain protein 113