PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010932017.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 236aa MW: 27242.6 Da PI: 8.1173 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.5 | 4.9e-16 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd ll ++v+++G W+ ++ + g++R++k+c++rw++yl XP_010932017.1 16 KGAWTVEEDALLRRCVEKYGATEWRHVPLRAGLNRCRKSCRLRWLNYL 63 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.6 | 4.3e-16 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ ++E +l+v+++k+lG++ W++Ia +++ gRt++++k++w+++l XP_010932017.1 69 RGSFGEDETDLIVRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNSHL 114 899*******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.014 | 11 | 67 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.82E-28 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.6E-14 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.7E-16 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-20 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.27E-9 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 18.455 | 68 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-14 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-14 | 69 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-22 | 71 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.01E-9 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0031540 | Biological Process | regulation of anthocyanin biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 236 aa Download sequence Send to blast |
MSFDSTTGTK QPGIRKGAWT VEEDALLRRC VEKYGATEWR HVPLRAGLNR CRKSCRLRWL 60 NYLRPGINRG SFGEDETDLI VRLHKLLGNR WSLIAGRLPG RTANDVKNYW NSHLSKKHDV 120 RDHKERSKHD DKVLKPRPQT IPRTWIWSRD HLSSASEIQQ EESEMQEIPS SSKNHKTWVD 180 AQIIGVPNVE NVITKEMQTD NRVIQDDNKD DESLTGVGGW EDLLQDIDIW GDLGTI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-24 | 12 | 120 | 3 | 110 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00213 | DAP | Transfer from AT1G66370 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010932017.2 | 1e-167 | transcription factor MYB113-like | ||||
Swissprot | Q9FNV9 | 1e-60 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A3Q0HSF8 | 1e-140 | A0A3Q0HSF8_PHODC; transcription factor MYB114-like | ||||
STRING | XP_008779039.1 | 1e-143 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP25500 | 2 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66370.1 | 2e-62 | myb domain protein 113 |
Publications ? help Back to Top | |||
---|---|---|---|
|