PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010931877.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 724aa    MW: 79973 Da    PI: 6.5123
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010931877.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.91.1e-2048103156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     r+k +++t+eq++eLe+lF+ +++p+ ++r+eL++k+g++++qVk+WFqNrR++ k
  XP_010931877.1  48 RKKYQRHTPEQIKELEALFRICPHPDDKQRRELSEKVGMEQQQVKFWFQNRRTQSK 103
                     7999*************************************************998 PP
2START152.34.3e-482464613206
                     HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
           START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                     a  a++el+ +a a+ep+W        e++n+de+ + f+++ +      ++e+ r +++ + ++  lv ++++++ +W++ +     +a+ le 
  XP_010931877.1 246 AAVAMEELMVMAHAGEPLWIPGLdgyyEILNEDEYARAFPRGLGpkrlaLRTEVTRGTTIMFTTPLFLVDIIMNVS-KWSTFFSgivsSADYLEM 339
                     66789***************9999999************99888********************************.********9998898885 PP

                     ..ECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--S CS
           START  85 ..issg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkg 174
                       is g  g lql++ae+q++splvp R  vf+Ry+r++ +g wvivdvS ++ ++ +     +R +++pSg+li+++sng+sk+twvehv++++
  XP_010931877.1 340 pfISIGseGMLQLITAEFQVPSPLVPpRGCVFLRYCRKHAEGFWVIVDVSMNNHDNSE-----IRYRRRPSGCLIQEMSNGYSKITWVEHVEVDD 429
                     44444456**********************************************9988.....8******************************* PP

                     SXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 175 rlphwllrslvksglaegaktwvatlqrqcek 206
                     + +h +++ +v+sgla+gak+w++tl+rqce+
  XP_010931877.1 430 SGVHDMYKAVVSSGLAFGAKRWLSTLERQCER 461
                     ******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.3E-203399IPR009057Homeodomain-like
SuperFamilySSF466896.27E-1937105IPR009057Homeodomain-like
PROSITE profilePS5007117.18445105IPR001356Homeobox domain
SMARTSM003893.6E-1947109IPR001356Homeobox domain
PfamPF000464.9E-1848103IPR001356Homeobox domain
CDDcd000868.43E-1948106No hitNo description
PROSITE patternPS00027080103IPR017970Homeobox, conserved site
PROSITE profilePS5084840.359235464IPR002913START domain
SuperFamilySSF559611.29E-30239463No hitNo description
CDDcd088758.77E-97244460No hitNo description
SMARTSM002347.3E-34244461IPR002913START domain
PfamPF018521.1E-38247461IPR002913START domain
Gene3DG3DSA:3.30.530.205.5E-5351459IPR023393START-like domain
SuperFamilySSF559611.06E-5478685No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
PQSFQITTGI EAPRLVDEED HSANPQTEVP ANASTGEDDQ QRRAAPKRKK YQRHTPEQIK  60
ELEALFRICP HPDDKQRREL SEKVGMEQQQ VKFWFQNRRT QSKNHRERDD NKKLRKENDE  120
LRLENLRIKE ALSNPCCQHC GGPCVIGKMS MDGRRLRLEN ASLQAEIEKV SVWISKHGNQ  180
SEMPSTALPE PEPSHQLVVS GVVTGTVKVP LNTMEAESSR AAELRGPSVT VQSQAQVQRP  240
FFENLAAVAM EELMVMAHAG EPLWIPGLDG YYEILNEDEY ARAFPRGLGP KRLALRTEVT  300
RGTTIMFTTP LFLVDIIMNV SKWSTFFSGI VSSADYLEMP FISIGSEGML QLITAEFQVP  360
SPLVPPRGCV FLRYCRKHAE GFWVIVDVSM NNHDNSEIRY RRRPSGCLIQ EMSNGYSKIT  420
WVEHVEVDDS GVHDMYKAVV SSGLAFGAKR WLSTLERQCE RLASISAINN PRFGLNANPE  480
GRKNILRLVE RMVVGFCGGV SGSRAQGWSH ISGIGAEDVK ITAKRNTVVT GSPPGITINA  540
STSLWLPLPP GRIFHFLRTS RNLVFRAPSI WDVLANGATI EEACQIANGR EEGNCISILN  600
VRGPESPSHV MILQENCSHA TGSYVIYAPI DVVALNAILT GQEADYVALL PCGFTIFPDL  660
PYGMQDGLVG EGGSGGSLLT VSFQILVDSN PDSNISADTI ANLNVLVTGT CDQIKGSLLA  720
KNAP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010930674.10.0homeobox-leucine zipper protein ROC2
TrEMBLA0A3Q0HQN50.0A0A3Q0HQN5_PHODC; homeobox-leucine zipper protein ROC7-like
STRINGXP_008812148.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3753923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2