PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010931837.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | C3H | ||||||||
Protein Properties | Length: 471aa MW: 53941.9 Da PI: 7.3018 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.1 | 5.7e-07 | 7 | 31 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+lC ++r G C + +C+FaHg+ XP_010931837.1 7 YKTKLCILYQR-GRCTR-QSCNFAHGE 31 9**********.*****.*******96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 2.75E-5 | 4 | 36 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.291 | 6 | 32 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.0E-10 | 6 | 36 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.01 | 6 | 31 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-4 | 7 | 31 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 471 aa Download sequence Send to blast |
MLGRKLYKTK LCILYQRGRC TRQSCNFAHG EAELRRFAGS FSGRREYRNG NLRGKLDRRH 60 SPHRRYSPVR DARGHHSYHS HKSISHDRGS SHSRSPIKRS ERRYRKKQRM DGESDVSGSF 120 NISDGSEDIK KGDKVSFYNE RIDLEEQIKQ IQLDIEMLDD HKSQLEIFLE EKVDEAQKLS 180 SRIEDLDSKL NKEQEDCKRC HFDYCKIKKF IKAHRHHMKA QEEMKRSQVR LQKLGDQISL 240 DPLKTRANEE ESSVNVVSDA EPNDDGDNQI SSRNDFLQRD VSSAKRRAFV DPATSEEAKI 300 GNSRKRGRYS DSITKSEKLI KSEGPALNSE HNSKGTDTTK TVLINNKSLT DDYKHKQGKL 360 DSATTSPLDK VKGSESRRSL PSTSMAAHAV DELIEAIEME EKPETIETAK HIENADAENR 420 TKSACLPPPP PLVPQNAYKQ YEGDDEDVEV EKVDAEMVDI DIDSEVEIEQ I |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 102 | 108 | RYRKKQR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010931837.1 | 0.0 | zinc finger CCCH domain-containing protein 13 | ||||
TrEMBL | A0A2H3YNC5 | 0.0 | A0A2H3YNC5_PHODC; zinc finger CCCH domain-containing protein 13 | ||||
STRING | XP_008801339.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3882 | 29 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21810.1 | 2e-47 | C3H family protein |