PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010931821.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 767aa    MW: 83834.1 Da    PI: 5.9819
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010931821.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.14.2e-2097152156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  q+k+WFqN+R+++k
  XP_010931821.1  97 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQIKFWFQNKRTQMK 152
                     688999***********************************************999 PP
2START225.22e-702885081206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela +a++el+++a+++ep+W+       e +n++e++++f+++ +     +++ea+r+++vv+m++ +lve+l+d++ qW++ +     +a+t 
  XP_010931821.1 288 ELAVAAMEELIRMAQLGEPLWTPGLdnstETLNEEEYVRTFPRGIGpkpfgFKSEASRETAVVIMNHINLVEILMDVN-QWSTVFSsivsRAMTF 381
                     57899*****************98888999*************999********************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     ev+s+g      galq+m+ae+q++splvp R+++fvRy++q+ +g+w++vdvS+ds ++ p    + R++++pSg+li++++ng+skv+wvehv
  XP_010931821.1 382 EVLSTGvagnynGALQVMSAEFQVPSPLVPtRESLFVRYCKQHADGTWAVVDVSLDSLRPSP----LLRCRRRPSGCLIQEMPNGYSKVIWVEHV 472
                     ************************************************************99....6**************************** PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     ++++r++h+++++lv+sgla+gak+wv+tl+rqce+
  XP_010931821.1 473 EVDDRSVHNIYKPLVNSGLAFGAKRWVSTLDRQCER 508
                     **********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.9E-2278152IPR009057Homeodomain-like
SuperFamilySSF466892.51E-1985154IPR009057Homeodomain-like
PROSITE profilePS5007116.87694154IPR001356Homeobox domain
SMARTSM003891.3E-1995158IPR001356Homeobox domain
CDDcd000862.79E-1996155No hitNo description
PfamPF000461.6E-1797152IPR001356Homeobox domain
PROSITE patternPS000270129152IPR017970Homeobox, conserved site
PROSITE profilePS5084845.162279511IPR002913START domain
SuperFamilySSF559611.47E-36281510No hitNo description
CDDcd088751.87E-129283507No hitNo description
SMARTSM002344.3E-65288508IPR002913START domain
PfamPF018521.5E-58289508IPR002913START domain
Gene3DG3DSA:3.30.530.202.4E-5385507IPR023393START-like domain
SuperFamilySSF559611.16E-25527756No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 767 aa     Download sequence    Send to blast
MPAGIMIPAR NVPSMIGRNT GAGYGSSSAL SLGQPNILEG QQLPLQHQHQ LVEIPQATTA  60
ESEMMRAREE DFESKSGSEN IEGASGDDQD ANQRPRKKRY HRHTQHQIQE MEAFFKECPH  120
PDDKQRKELS RELGLEPLQI KFWFQNKRTQ MKTQHERQEN AHLRAENEKL RTENLRYKEA  180
LSNASCPNCG GPAALGEMSF DEHHLRIENA RLREEIDRIS GIAAKYVGKP VVSYPLLSPP  240
IASRSPLDLG VTGGFGVQPG IGSETFGAGE LLRSVSCQPE FEKPMVIELA VAAMEELIRM  300
AQLGEPLWTP GLDNSTETLN EEEYVRTFPR GIGPKPFGFK SEASRETAVV IMNHINLVEI  360
LMDVNQWSTV FSSIVSRAMT FEVLSTGVAG NYNGALQVMS AEFQVPSPLV PTRESLFVRY  420
CKQHADGTWA VVDVSLDSLR PSPLLRCRRR PSGCLIQEMP NGYSKVIWVE HVEVDDRSVH  480
NIYKPLVNSG LAFGAKRWVS TLDRQCERLA SVMASSIPSG DIGVITTPDG RKSMLKLAER  540
MVMSFCGGVT ASTTHQWTTL SGSGAEDVRV MTRKSVDDPG RPPGIVLNAA TSFWLPVPPK  600
RVFDFLRDES SRSEWDILSN GGVVQEMAHI ANGRDHGNCV SLLRVNSANS NQSNMLILQE  660
SCTDPTGSYV IYAPVDFVAM NVVLNGGDPN YVALLPSGFA ILPDGPTGSI GEVGSGGSLL  720
TVAFQILVDS VPTAKLSLGS VATVNSLIAC TVERIKAAVS GENAQQA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010931820.10.0homeobox-leucine zipper protein ROC2
SwissprotQ0J9X20.0ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2
TrEMBLA0A2H3XJ310.0A0A2H3XJ31_PHODC; homeobox-leucine zipper protein ROC2-like isoform X1
STRINGXP_008784552.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]