PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010931796.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB_related | ||||||||
Protein Properties | Length: 1214aa MW: 134585 Da PI: 9.3575 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.8 | 2.8e-09 | 46 | 81 | 3 | 40 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++eE e++++a +++G++ W+++a + +R+ +++ XP_010931796.1 46 QWSKEELERFYEAYRKYGKD-WRKVAGAVR-NRSSEMV 81 6*****************99.*********.**99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.93E-10 | 42 | 89 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-5 | 43 | 91 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-6 | 46 | 85 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.1E-8 | 46 | 82 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.39E-6 | 47 | 81 | No hit | No description |
PROSITE profile | PS50090 | 6.226 | 47 | 86 | IPR017877 | Myb-like domain |
SMART | SM01135 | 3.7E-57 | 670 | 771 | IPR033471 | DIRP domain |
Pfam | PF06584 | 2.1E-33 | 670 | 770 | IPR033471 | DIRP domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0016592 | Cellular Component | mediator complex | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1214 aa Download sequence Send to blast |
MASTRKSRNV NKRFAKVNDE WLDKDATVVN KSKTRKRKLS DMLGTQWSKE ELERFYEAYR 60 KYGKDWRKVA GAVRNRSSEM VEALYNMSRA YLSLPEGTAT AAGLIAMMTD HYNILEGSDS 120 GRESNDVSRT SRKTQKRGRG KFRLMSKSSD DQYPDLLQYQ SGPTASGCLS LLKKKRSGDL 180 FPGSRPRAVG KRTPRVPVSN MYGRDDRDKI LSPNKQALKS VSNTADDEGA HVAALALAEV 240 SQRGGSPQLS RTPGRRADHM RSSPAKSGEK KNAESEMDSS KLVGAQMEGD CHEGSLGSRE 300 AENGDFARDA THLIENEGAA AVETRRKVKK LQGKRKKVPA DMENDQLDDD REACSGTEEG 360 INIRKIKDEI DGETTDGKTA RGSKSSRKRS RQLFFGDESS ALDALQTLAD LSVNILLPTS 420 TVESESSFQV KEEKRNIDTA EEPNIPESMS TTHERDQSKV SVKKETGYST SVGTDAVTRK 480 SAKRAKCLRH DANVISEVKQ QTCACTSETQ KKKRKSLTGK ASKGEFNSDA QKYEPQKIEV 540 SAEEGKRLVG KTRRVSHVSS SPKQGKLVKL QENSSSSTDL VRPITDSNET IVQASTTCPG 600 NLLTKSKNRR KIGLQKAWAL KEFKSNESAV GDRPDKYLHP VNRGVVDLKE KLSHCLSSRM 660 LRRWCMFEWF YSAIDYPWFA KSEFVEYLNH VRLGHVPRLT RIEWGVIRSS LGKPRRLSKQ 720 FLQEEREKLE QYRESVRKHY AELRAGVREG LPTDLAQPLS VGQRVIACHP KTREIHDGSI 780 LTVDRNRCRV QFDRPELGVE LVMDIDCMPL NPLENIPEAL RRQNIVANKF CTSFADTKLE 840 DGSKEWKIGG SMKFAPAESL EITNGSSSIA SSSYPMHTLM KQAKAKATVN EVAVAAQQAM 900 YSQPCTLSQI QEREADIRVL AELSRALDKK EALLMELRHM NEEVSGKQRD GDAIKDLEHF 960 RKQYAMVLVQ LRDANDQVAS ALLSLRQRNT YHGNSTHAWV RPIENSGGPA GPADSCNSSA 1020 FLNQDSGSHV TEIVESSRRK ARTVVDAAVQ AMCALKEGED AFVKIGEALD SVNSRISGPG 1080 SGVLGVRRNP PDPGHGGSAY QDHTTSCMPE ATASHASPKP HLSSDSEIQL PSDLISSCVA 1140 TLLMIQTCTE RQCPPAEIAQ ILDSAVASLQ PCCPQNLPIY REIETFMGII KNQMLALIPT 1200 PSIIPPVEVP IVQK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 324 | 336 | RRKVKKLQGKRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010931796.1 | 0.0 | protein ALWAYS EARLY 2 isoform X3 | ||||
TrEMBL | A0A2H3Z1M0 | 0.0 | A0A2H3Z1M0_PHODC; protein ALWAYS EARLY 2-like isoform X1 | ||||
STRING | XP_008806732.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 0.0 | DNA binding |