PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010931795.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

MYB_related

Protein Properties

Length: 1219aa MW: 135025 Da PI: 9.3067

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010931795.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.8	2.8e-09	46	81	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++eE e++++a +++G++ W+++a + +R+ +++ XP_010931795.1 46 QWSKEELERFYEAYRKYGKD-WRKVAGAVR-NRSSEMV 81 6***************99.*****.99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.93E-10	42	89	IPR009057	Homeodomain-like
SMART	SM00717	4.1E-5	43	91	IPR001005	SANT/Myb domain
Pfam	PF00249	5.1E-8	46	82	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.2E-6	46	85	IPR009057	Homeodomain-like
CDD	cd00167	4.25E-6	47	81	No hit	No description
PROSITE profile	PS50090	6.226	47	86	IPR017877	Myb-like domain
Pfam	PF06584	2.1E-33	666	766	IPR033471	DIRP domain
SMART	SM01135	3.7E-57	666	767	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1219 aa Download sequence Send to blast
MASTRKSRNV NKRFAKVNDE WLDKDATVVN KSKTRKRKLS DMLGTQWSKE ELERFYEAYR 60 KYGKDWRKVA GAVRNRSSEM VEALYNMSRA YLSLPEGTAT AAGLIAMMTD HYNILEGSDS 120 GRESNDVSRT SRKTQKRGRG KFRLMSKSSD DQYPDLLQYQ SGPTASGCLS LLKKKRSGGS 180 RPRAVGKRTP RVPVSNMYGR DDRDKILSPN KQALKSVSNT ADDEGAHVAA LALAEVSQRG 240 GSPQLSRTPG RRADHMRSSP AKSGEKKNAE SEMDSSKLVG AQMEGDCHEG SLGSREAENG 300 DFARDATHLI ENEGAAAVET RRKVKKLQGK RKKVPADMEN DQLDDDREAC SGTEEGINIR 360 KIKDEIDGET TDGKTARGSK SSRKRSRQLF FGDESSALDA LQTLADLSVN ILLPTSTVES 420 ESSFQVKEEK RNIDTAEEPN IPESMSTTHE RDQSKVSVKK ETGYSTSVGT DAVTRKSAKR 480 AKCLRHDANV ISEVKQQTCA CTSETQKKKR KSLTGKASKG EFNSDAQKYE PQKIEVSAEE 540 GKRLVGKTRR VSHVSSSPKQ GKLVKLQENS SSSTDLVRPI TDSNETIVQA STTCPGNLLT 600 KSKNRRKIGL QKAWALKEFK SNESAVGDRP DKYLHPVNRG VVDLKEKLSH CLSSRMLRRW 660 CMFEWFYSAI DYPWFAKSEF VEYLNHVRLG HVPRLTRIEW GVIRSSLGKP RRLSKQFLQE 720 EREKLEQYRE SVRKHYAELR AGVREGLPTD LAQPLSVGQR VIACHPKTRE IHDGSILTVD 780 RNRCRVQFDR PELGVELVMD IDCMPLNPLE NIPEALRRQN IVANKFCTSF ADTKLEDGSK 840 EWKIGGSMKF APAESLEITN GSSSIASSSY PMHTLMKQAK GDTIDAIVQA KATVNEVAVA 900 AQQAMYSQPC TLSQIQEREA DIRVLAELSR ALDKKEALLM ELRHMNEEVS GKQRDGDAIK 960 DLEHFRKQYA MVLVQLRDAN DQVASALLSL RQRNTYHGNS THAWVRPIEN SGGPAGPADS 1020 CNSSAFLNQD SGSHVTEIVE SSRRKARTVV DAAVQAMCAL KEGEDAFVKI GEALDSVNSR 1080 ISGPGSGVLG VRRNPPDPGH GGSAYQDHTT SCMPEATASH ASPKPHLSSD SEIQLPSDLI 1140 SSCVATLLMI QTCTERQCPP AEIAQILDSA VASLQPCCPQ NLPIYREIET FMGIIKNQML 1200 ALIPTPSIIP PVEVPIVQK

Sequence ? help Back to Top

Protein Sequence Length: 1219 aa Download sequence Send to blast

MASTRKSRNV NKRFAKVNDE WLDKDATVVN KSKTRKRKLS DMLGTQWSKE ELERFYEAYR  60
KYGKDWRKVA GAVRNRSSEM VEALYNMSRA YLSLPEGTAT AAGLIAMMTD HYNILEGSDS  120
GRESNDVSRT SRKTQKRGRG KFRLMSKSSD DQYPDLLQYQ SGPTASGCLS LLKKKRSGGS  180
RPRAVGKRTP RVPVSNMYGR DDRDKILSPN KQALKSVSNT ADDEGAHVAA LALAEVSQRG  240
GSPQLSRTPG RRADHMRSSP AKSGEKKNAE SEMDSSKLVG AQMEGDCHEG SLGSREAENG  300
DFARDATHLI ENEGAAAVET RRKVKKLQGK RKKVPADMEN DQLDDDREAC SGTEEGINIR  360
KIKDEIDGET TDGKTARGSK SSRKRSRQLF FGDESSALDA LQTLADLSVN ILLPTSTVES  420
ESSFQVKEEK RNIDTAEEPN IPESMSTTHE RDQSKVSVKK ETGYSTSVGT DAVTRKSAKR  480
AKCLRHDANV ISEVKQQTCA CTSETQKKKR KSLTGKASKG EFNSDAQKYE PQKIEVSAEE  540
GKRLVGKTRR VSHVSSSPKQ GKLVKLQENS SSSTDLVRPI TDSNETIVQA STTCPGNLLT  600
KSKNRRKIGL QKAWALKEFK SNESAVGDRP DKYLHPVNRG VVDLKEKLSH CLSSRMLRRW  660
CMFEWFYSAI DYPWFAKSEF VEYLNHVRLG HVPRLTRIEW GVIRSSLGKP RRLSKQFLQE  720
EREKLEQYRE SVRKHYAELR AGVREGLPTD LAQPLSVGQR VIACHPKTRE IHDGSILTVD  780
RNRCRVQFDR PELGVELVMD IDCMPLNPLE NIPEALRRQN IVANKFCTSF ADTKLEDGSK  840
EWKIGGSMKF APAESLEITN GSSSIASSSY PMHTLMKQAK GDTIDAIVQA KATVNEVAVA  900
AQQAMYSQPC TLSQIQEREA DIRVLAELSR ALDKKEALLM ELRHMNEEVS GKQRDGDAIK  960
DLEHFRKQYA MVLVQLRDAN DQVASALLSL RQRNTYHGNS THAWVRPIEN SGGPAGPADS  1020
CNSSAFLNQD SGSHVTEIVE SSRRKARTVV DAAVQAMCAL KEGEDAFVKI GEALDSVNSR  1080
ISGPGSGVLG VRRNPPDPGH GGSAYQDHTT SCMPEATASH ASPKPHLSSD SEIQLPSDLI  1140
SSCVATLLMI QTCTERQCPP AEIAQILDSA VASLQPCCPQ NLPIYREIET FMGIIKNQML  1200
ALIPTPSIIP PVEVPIVQK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	320	332	RRKVKKLQGKRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010931795.1	0.0	protein ALWAYS EARLY 2 isoform X2
TrEMBL	A0A2H3Z191	0.0	A0A2H3Z191_PHODC; protein ALWAYS EARLY 2-like isoform X2
STRING	XP_008806732.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding