PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010931794.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB_related | ||||||||
Protein Properties | Length: 1221aa MW: 135299 Da PI: 9.2007 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.8 | 2.8e-09 | 46 | 81 | 3 | 40 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++eE e++++a +++G++ W+++a + +R+ +++ XP_010931794.1 46 QWSKEELERFYEAYRKYGKD-WRKVAGAVR-NRSSEMV 81 6*****************99.*********.**99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.93E-10 | 42 | 89 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-5 | 43 | 91 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-6 | 46 | 85 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.2E-8 | 46 | 82 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.06E-6 | 47 | 81 | No hit | No description |
PROSITE profile | PS50090 | 6.226 | 47 | 86 | IPR017877 | Myb-like domain |
SMART | SM01135 | 3.7E-57 | 670 | 771 | IPR033471 | DIRP domain |
Pfam | PF06584 | 2.1E-33 | 670 | 770 | IPR033471 | DIRP domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0016592 | Cellular Component | mediator complex | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1221 aa Download sequence Send to blast |
MASTRKSRNV NKRFAKVNDE WLDKDATVVN KSKTRKRKLS DMLGTQWSKE ELERFYEAYR 60 KYGKDWRKVA GAVRNRSSEM VEALYNMSRA YLSLPEGTAT AAGLIAMMTD HYNILEGSDS 120 GRESNDVSRT SRKTQKRGRG KFRLMSKSSD DQYPDLLQYQ SGPTASGCLS LLKKKRSGDL 180 FPGSRPRAVG KRTPRVPVSN MYGRDDRDKI LSPNKQALKS VSNTADDEGA HVAALALAEV 240 SQRGGSPQLS RTPGRRADHM RSSPAKSGEK KNAESEMDSS KLVGAQMEGD CHEGSLGSRE 300 AENGDFARDA THLIENEGAA AVETRRKVKK LQGKRKKVPA DMENDQLDDD REACSGTEEG 360 INIRKIKDEI DGETTDGKTA RGSKSSRKRS RQLFFGDESS ALDALQTLAD LSVNILLPTS 420 TVESESSFQV KEEKRNIDTA EEPNIPESMS TTHERDQSKV SVKKETGYST SVGTDAVTRK 480 SAKRAKCLRH DANVISEVKQ QTCACTSETQ KKKRKSLTGK ASKGEFNSDA QKYEPQKIEV 540 SAEEGKRLVG KTRRVSHVSS SPKQGKLVKL QENSSSSTDL VRPITDSNET IVQASTTCPG 600 NLLTKSKNRR KIGLQKAWAL KEFKSNESAV GDRPDKYLHP VNRGVVDLKE KLSHCLSSRM 660 LRRWCMFEWF YSAIDYPWFA KSEFVEYLNH VRLGHVPRLT RIEWGVIRSS LGKPRRLSKQ 720 FLQEEREKLE QYRESVRKHY AELRAGVREG LPTDLAQPLS VGQRVIACHP KTREIHDGSI 780 LTVDRNRCRV QFDRPELGVE LVMDIDCMPL NPLENIPEAL RRQNIVANKF CTSFADTKLE 840 DGSKEWKIGG SMKFAPAESL EITNGSSSIA SSSYPMHTLM KQGDTIDAIV QAKATVNEVA 900 VAAQQAMYSQ PCTLSQIQER EADIRVLAEL SRALDKKEAL LMELRHMNEE VSGKQRDGDA 960 IKDLEHFRKQ YAMVLVQLRD ANDQVASALL SLRQRNTYHG NSTHAWVRPI ENSGGPAGPA 1020 DSCNSSAFLN QDSGSHVTEI VESSRRKART VVDAAVQAMC ALKEGEDAFV KIGEALDSVN 1080 SRISGPGSGV LGVRRNPPDP GHGGSAYQDH TTSCMPEATA SHASPKPHLS SDSEIQLPSD 1140 LISSCVATLL MIQTCTERQC PPAEIAQILD SAVASLQPCC PQNLPIYREI ETFMGIIKNQ 1200 MLALIPTPSI IPPVEVPIVQ K |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 324 | 336 | RRKVKKLQGKRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010931793.1 | 0.0 | protein ALWAYS EARLY 2 isoform X1 | ||||
TrEMBL | A0A2H3Z1M0 | 0.0 | A0A2H3Z1M0_PHODC; protein ALWAYS EARLY 2-like isoform X1 | ||||
STRING | XP_008806732.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 0.0 | DNA binding |