PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010931793.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 1223aa    MW: 135498 Da    PI: 9.2539
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010931793.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.82.8e-094681340
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                      W++eE e++++a +++G++ W+++a  +  +R+ +++
   XP_010931793.1 46 QWSKEELERFYEAYRKYGKD-WRKVAGAVR-NRSSEMV 81
                     6*****************99.*********.**99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.93E-104289IPR009057Homeodomain-like
SMARTSM007174.1E-54391IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-64685IPR009057Homeodomain-like
PfamPF002495.2E-84682IPR001005SANT/Myb domain
CDDcd001674.11E-64781No hitNo description
PROSITE profilePS500906.2264786IPR017877Myb-like domain
SMARTSM011353.7E-57670771IPR033471DIRP domain
PfamPF065842.1E-33670770IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1223 aa     Download sequence    Send to blast
MASTRKSRNV NKRFAKVNDE WLDKDATVVN KSKTRKRKLS DMLGTQWSKE ELERFYEAYR  60
KYGKDWRKVA GAVRNRSSEM VEALYNMSRA YLSLPEGTAT AAGLIAMMTD HYNILEGSDS  120
GRESNDVSRT SRKTQKRGRG KFRLMSKSSD DQYPDLLQYQ SGPTASGCLS LLKKKRSGDL  180
FPGSRPRAVG KRTPRVPVSN MYGRDDRDKI LSPNKQALKS VSNTADDEGA HVAALALAEV  240
SQRGGSPQLS RTPGRRADHM RSSPAKSGEK KNAESEMDSS KLVGAQMEGD CHEGSLGSRE  300
AENGDFARDA THLIENEGAA AVETRRKVKK LQGKRKKVPA DMENDQLDDD REACSGTEEG  360
INIRKIKDEI DGETTDGKTA RGSKSSRKRS RQLFFGDESS ALDALQTLAD LSVNILLPTS  420
TVESESSFQV KEEKRNIDTA EEPNIPESMS TTHERDQSKV SVKKETGYST SVGTDAVTRK  480
SAKRAKCLRH DANVISEVKQ QTCACTSETQ KKKRKSLTGK ASKGEFNSDA QKYEPQKIEV  540
SAEEGKRLVG KTRRVSHVSS SPKQGKLVKL QENSSSSTDL VRPITDSNET IVQASTTCPG  600
NLLTKSKNRR KIGLQKAWAL KEFKSNESAV GDRPDKYLHP VNRGVVDLKE KLSHCLSSRM  660
LRRWCMFEWF YSAIDYPWFA KSEFVEYLNH VRLGHVPRLT RIEWGVIRSS LGKPRRLSKQ  720
FLQEEREKLE QYRESVRKHY AELRAGVREG LPTDLAQPLS VGQRVIACHP KTREIHDGSI  780
LTVDRNRCRV QFDRPELGVE LVMDIDCMPL NPLENIPEAL RRQNIVANKF CTSFADTKLE  840
DGSKEWKIGG SMKFAPAESL EITNGSSSIA SSSYPMHTLM KQAKGDTIDA IVQAKATVNE  900
VAVAAQQAMY SQPCTLSQIQ EREADIRVLA ELSRALDKKE ALLMELRHMN EEVSGKQRDG  960
DAIKDLEHFR KQYAMVLVQL RDANDQVASA LLSLRQRNTY HGNSTHAWVR PIENSGGPAG  1020
PADSCNSSAF LNQDSGSHVT EIVESSRRKA RTVVDAAVQA MCALKEGEDA FVKIGEALDS  1080
VNSRISGPGS GVLGVRRNPP DPGHGGSAYQ DHTTSCMPEA TASHASPKPH LSSDSEIQLP  1140
SDLISSCVAT LLMIQTCTER QCPPAEIAQI LDSAVASLQP CCPQNLPIYR EIETFMGIIK  1200
NQMLALIPTP SIIPPVEVPI VQK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1324336RRKVKKLQGKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010931793.10.0protein ALWAYS EARLY 2 isoform X1
TrEMBLA0A2H3Z1M00.0A0A2H3Z1M0_PHODC; protein ALWAYS EARLY 2-like isoform X1
STRINGXP_008806732.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62302331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding