PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010931580.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GRAS
Protein Properties Length: 488aa    MW: 54512.7 Da    PI: 6.6382
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010931580.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS435.83.2e-133534831373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLl+cA++v++g+le a+a+L+++s la+pdgd+mqR+a++fteALa+r++rs+++ly+al+p + + +   ++l a++ f++++P++++++
  XP_010931580.1  53 LIHLLLNCANHVAAGQLEHANAFLENISLLAAPDGDTMQRIATHFTEALARRVLRSWPGLYRALHPPTVP-RLPPDALLARRHFFDLCPFVRLAF 146
                     689*************************************************************998886.689999****************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                     l+ NqaIlea+ege+ vH++D++  +s  +QW+aLlqaL  Rpegpp+lR+T+v++    +ke l  t+ rL++ Ae+l+vpf+f++ ++ rl++
  XP_010931580.1 147 LVSNQAILEAMEGERVVHVVDLGgaASDAAQWAALLQALRVRPEGPPHLRLTVVHE----HKEFLDLTATRLTEEAERLDVPFQFHP-IVARLDN 236
                     **********************8667999***************************....9**************************.6999*** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrll............................................................desvsles. 222
                     l++e+Lr+k+gEa+a+++vlqlh+ll                                                            ++s++l+  
  XP_010931580.1 237 LDVEMLRIKTGEAVAISSVLQLHTLLaaddlaavgghqrktapplaknpsttqlhrivqmnhqgtlgemlekdhanghspsqdsasSSSLALTPs 331
                     *********************************************************************************98877444443335 PP

            GRAS 223 .erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWr 316
                      +++ +L  +++lsPkv+vv+eqe++hn++++ erf+eal++y+alfd+le+++pr s er+ +E++l+g+ei+n++aceg errerhe+lekW 
  XP_010931580.1 332 pKTECFLASLWGLSPKVMVVTEQESNHNGPKLTERFMEALNFYAALFDCLESTAPRMSVERARIEKMLFGEEIKNIIACEGGERRERHEKLEKWV 426
                     67899****************************************************************************************** PP

            GRAS 317 erleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     +rle aGF  vpls+ a+ qa++ll+ ++ +gy+v ee+g+++++W+drpL+svSaW
  XP_010931580.1 427 QRLELAGFLRVPLSYLAMLQARRLLQSYGCEGYKVREEDGCFFFCWQDRPLFSVSAW 483
                     ********************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.29427464IPR005202Transcription factor GRAS
PfamPF035141.1E-13053483IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MMEGMVQDEG SSSVTSSPLQ CFSLMSLSPA AQLMSPPVPW LRELKADERG LCLIHLLLNC  60
ANHVAAGQLE HANAFLENIS LLAAPDGDTM QRIATHFTEA LARRVLRSWP GLYRALHPPT  120
VPRLPPDALL ARRHFFDLCP FVRLAFLVSN QAILEAMEGE RVVHVVDLGG AASDAAQWAA  180
LLQALRVRPE GPPHLRLTVV HEHKEFLDLT ATRLTEEAER LDVPFQFHPI VARLDNLDVE  240
MLRIKTGEAV AISSVLQLHT LLAADDLAAV GGHQRKTAPP LAKNPSTTQL HRIVQMNHQG  300
TLGEMLEKDH ANGHSPSQDS ASSSSLALTP SPKTECFLAS LWGLSPKVMV VTEQESNHNG  360
PKLTERFMEA LNFYAALFDC LESTAPRMSV ERARIEKMLF GEEIKNIIAC EGGERRERHE  420
KLEKWVQRLE LAGFLRVPLS YLAMLQARRL LQSYGCEGYK VREEDGCFFF CWQDRPLFSV  480
SAWGFRRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-37374832377Protein SCARECROW
5b3h_D1e-37374832377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010931580.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2H3X0V50.0A0A2H3X0V5_PHODC; scarecrow-like protein 3
STRINGXP_008776639.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]