PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010931547.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NF-YC
Protein Properties Length: 281aa    MW: 30730.8 Da    PI: 5.4505
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010931547.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC34.44.7e-116771898
           NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                    ++++P +rikki++adedv +i+  +Pvl+   c+    ++tlr  +++       +    ++++v + ++fdfl div +
  XP_010931547.1  6 ETRFPASRIKKIMQADEDVGKIALAVPVLVY-LCDR-TYDITLRRGMKT-------MSALHLKQCVHSFNVFDFLKDIVSK 77
                    5789***********************9875.6775.469999988875.......555678899*************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.49E-13380IPR009072Histone-fold
PfamPF008083.3E-8862IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.7E-13976IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MRKKLETRFP ASRIKKIMQA DEDVGKIALA VPVLVYLCDR TYDITLRRGM KTMSALHLKQ  60
CVHSFNVFDF LKDIVSKVPD MGTSDAGGDD RSAKRRKAAD DDNDNEELKR SKAHEGAAAH  120
GGGGRGRGRG RGRGRGARGA RGADKDGAHY DKYEDDPGSS PQHSDRPPHM KSEIVDDGIS  180
ARESKETTVS CSNAGAAIRN FDLNLDLDEN GDTPTAAATA TDSIKATATA ASSETNHEMK  240
HDEYPGWSLS DMDKMAIDPI QFALSNRRLD EEEEDYDNED G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124134RGRGRGRGRGR
2126135RGRGRGRGRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010931547.10.0dr1-associated corepressor isoform X2
TrEMBLA0A2H3XPI21e-139A0A2H3XPI2_PHODC; dr1-associated corepressor-like isoform X1
STRINGXP_008786874.11e-139(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.11e-41nuclear factor Y, subunit C11