PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010931451.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 374aa    MW: 41108 Da    PI: 8.0457
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010931451.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.7e-1699143247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        W + Ed +l ++v+++G+++W++Ia+++  gR++k+c++rw++ 
   XP_010931451.1  99 CHWRPSEDARLRELVAEYGPHNWNLIAEKLE-GRSGKSCRLRWFNQ 143
                      57*****************************.***********996 PP
2Myb_DNA-binding55.81e-17151194247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++++eE+e+l+ a+k +G++ W+ Iar ++ gRt++++k++w+  
   XP_010931451.1 151 TAFSEEEEERLLAAHKFYGNK-WAHIARFFP-GRTDNSVKNHWHVM 194
                      689******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.94893144IPR017930Myb domain
SMARTSM007171.4E-1397146IPR001005SANT/Myb domain
PfamPF002491.1E-1598143IPR001005SANT/Myb domain
SuperFamilySSF466892.62E-2898191IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.5E-26100151IPR009057Homeodomain-like
CDDcd001677.22E-14101142No hitNo description
PROSITE profilePS5129425.568145199IPR017930Myb domain
SMARTSM007174.7E-16149197IPR001005SANT/Myb domain
PfamPF002499.4E-15151193IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-20152197IPR009057Homeodomain-like
CDDcd001673.63E-8161195No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MGSLNPKSAA GMGFFPPPPP PSSGPFLGAS NTHSAERECR PGDMGFPSEK KQGEVFQGFK  60
GGQGSPGDEK SDGDEGEEGE NSGGRRCNEG GRTKISVRCH WRPSEDARLR ELVAEYGPHN  120
WNLIAEKLEG RSGKSCRLRW FNQLDPRINK TAFSEEEEER LLAAHKFYGN KWAHIARFFP  180
GRTDNSVKNH WHVMMARRRK EMCLGYRRMK PSATFLNPSV PILPRMVEVG SGNNNAHSGE  240
STITTNRDES ASSAPGLSLT SNNNMVIPGF VDRFGPSELP QHFRFLMGSH EKPVAATNVC  300
REKFGTPASC FYNSAPMLMA MGVHQAGHSE ATCRASTTES EANLRNNAII HAERENDGEK  360
MTLPLIDFLG VGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-321011987104C-Myb DNA-Binding Domain
1msf_C2e-321011987104C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010931451.10.0transcription factor CSA
TrEMBLA0A2H3XS730.0A0A2H3XS73_PHODC; transcription factor CSA-like
STRINGXP_008787993.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-61myb domain protein 105