PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010931441.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | NAC | ||||||||
Protein Properties | Length: 300aa MW: 34493.7 Da PI: 6.1681 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.6 | 1e-52 | 13 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+v+yL+kkv+ ++l++ +i+evd+yk++Pw+Lp k+ +++ewyfF++rd+ky++g+r+nra+ +gyWkatg dk+v+ k XP_010931441.1 13 LPPGFRFHPTDEELIVHYLCKKVTYQPLPV-PIIAEVDLYKYDPWELPDKALFGQREWYFFTPRDRKYPNGSRPNRAAGKGYWKATGADKPVVPK 106 79****************************.88***************7777899**************************************98 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++ g+kk Lvfy+g+ap+g+ktdW+mheyrl XP_010931441.1 107 gSTRALGIKKALVFYSGKAPRGVKTDWIMHEYRL 140 66778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-64 | 9 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.493 | 13 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.9E-27 | 14 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MGKRRDAEAE LNLPPGFRFH PTDEELIVHY LCKKVTYQPL PVPIIAEVDL YKYDPWELPD 60 KALFGQREWY FFTPRDRKYP NGSRPNRAAG KGYWKATGAD KPVVPKGSTR ALGIKKALVF 120 YSGKAPRGVK TDWIMHEYRL VDKNRATNKG SQRLDEWVLC RLYNKKNSWE KMHQQKEASF 180 GETMDSLDDT GSDSFRTPES DIDNDVVLPD LDDMFQPGAY PSQASNGIQA IRASNTAVYQ 240 PAMEQRQKEE NEWFMDLKLD DLQTSYMAFG STTAPDILNQ DYYSSNLLQP RSNQNDLPPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-95 | 1 | 171 | 3 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010931441.1 | 0.0 | NAC domain-containing protein 68 isoform X1 | ||||
Swissprot | Q52QH4 | 1e-117 | NAC68_ORYSJ; NAC domain-containing protein 68 | ||||
TrEMBL | A0A2H3XS78 | 0.0 | A0A2H3XS78_PHODC; NAC domain-containing protein 68-like | ||||
STRING | XP_008787999.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77450.1 | 1e-85 | NAC domain containing protein 32 |