PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010931440.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NAC
Protein Properties Length: 330aa    MW: 38153.9 Da    PI: 8.0413
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010931440.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.31.3e-52131401128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+v+yL+kkv+ ++l++  +i+evd+yk++Pw+Lp k+  +++ewyfF++rd+ky++g+r+nra+ +gyWkatg dk+v+ k
  XP_010931440.1  13 LPPGFRFHPTDEELIVHYLCKKVTYQPLPV-PIIAEVDLYKYDPWELPDKALFGQREWYFFTPRDRKYPNGSRPNRAAGKGYWKATGADKPVVPK 106
                     79****************************.88***************7777899**************************************98 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++++ g+kk Lvfy+g+ap+g+ktdW+mheyrl
  XP_010931440.1 107 gSTRALGIKKALVFYSGKAPRGVKTDWIMHEYRL 140
                     66778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-619157IPR003441NAC domain
PROSITE profilePS5100558.99113195IPR003441NAC domain
PfamPF023656.1E-2714140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MGKRRDAEAE LNLPPGFRFH PTDEELIVHY LCKKVTYQPL PVPIIAEVDL YKYDPWELPD  60
KALFGQREWY FFTPRDRKYP NGSRPNRAAG KGYWKATGAD KPVVPKGSTR ALGIKKALVF  120
YSGKAPRGVK TDWIMHEYRL VDKNRATNKG SQRVCRANQR RNKPFGHYSM NIRSNEKIHD  180
FMQLDEWVLC RLYNKKNSWE KMHQQKEASF GETMDSLDDT GSDSFRTPES DIDNDVVLPD  240
LDDMFQPGAY PSQASNGIQA IRASNTAVYQ PAMEQRQKEE NEWFMDLKLD DLQTSYMAFG  300
STTAPDILNQ DYYSSNLLQP RSNQNDLPPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-9012013174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010931440.10.0NAC domain-containing protein 68 isoform X2
SwissprotQ52QH41e-111NAC68_ORYSJ; NAC domain-containing protein 68
TrEMBLA0A2H3XS780.0A0A2H3XS78_PHODC; NAC domain-containing protein 68-like
STRINGXP_008787999.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53893761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63790.12e-80NAC domain containing protein 102
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Taga Y, et al.
    Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4.
    Plant Signal Behav, 2009. 4(8): p. 740-2
    [PMID:19820348]
  3. Xia N, et al.
    Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses.
    Mol. Biol. Rep., 2010. 37(8): p. 3703-12
    [PMID:20213512]
  4. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  5. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]
  6. Ootsubo Y,Hibino T,Wakazono T,Mukai Y,Che FS
    IREN, a novel EF-hand motif-containing nuclease, functions in the degradation of nuclear DNA during the hypersensitive response cell death in rice.
    Biosci. Biotechnol. Biochem., 2016. 80(4): p. 748-60
    [PMID:26766411]