PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010931426.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

GRAS

Protein Properties

Length: 765aa MW: 82639.3 Da PI: 6.4422

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010931426.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	411.9	5.9e-126	392	747	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 +lLl+cAeav++++le+a++lL ++sel++p g++ qR+aayf eA++arl++s+ +ly+ lp+ + + s+ ++a+++f+ +sP++kfsh+ XP_010931426.1 392 LTLLLQCAEAVAADNLEEANRLLLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGLYAPLPSVPHR----SRLVSAFQVFNGISPFVKFSHF 482 579**********************************************************999997....789999************ PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191 taNqaI ea+e+e+rvHiiD+di+qGlQWp L++ LasRp+gpp++R+Tg+gs s e+le+tg+rL++fA++lg+pfef + va+++ +l++ XP_010931426.1 483 TANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLGS----SIEALEATGKRLSDFAQTLGLPFEFCP-VAEKVGNLDP 572 *************************************************....9**********************.7***** PP GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286 ++L v+++EalaV++ + h+l+d ++s ++ +L+l+++l Pkvv++veq+++ ++sFl rf+ea++yysalfdsl a+++++s+er+ vE XP_010931426.1 573 DRLGVNRREALAVHWLH--HSLYDVTGSDTN----TLWLLQRLAPKVVTMVEQDLSQ-TGSFLSRFVEAIHYYSALFDSLGASYGEDSQERHIVE 660 ************9..999999999999....****************98.899****************************** PP GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++ll+rei+nv+a g +r+ + + +++Wre+l+++GF+ ++l +aa+qa lll +++sdgy++ ee+g+l lgWkd L+++SaWr XP_010931426.1 661 QQLLSREIRNVLAVGGPARTGEVK-FGNWREKLSQSGFRVISLAGNAAAQATLLLGMFPSDGYTLVEENGTLKLGWKDLCLLTASAWR 747 **************998887.************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.342	365	727	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.0E-123	392	747	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 765 aa Download sequence Send to blast
MAFSSCLLLP PPSSSHDPPN FSSIPQPTTI STPPLLPHSQ QHQHHHHQQQ QQLEPEELLF 60 YLHLQQQQQR LLQHHQEKLD KMVRKRPASE LDLQAESSAY PNPTRLTRRG NNSSASAALP 120 PGFIGDLQAQ SPLLFEPSLN PNPPTVLLPG AGPSTLLQSL PPQLPAPPAV CGFPGPPLFP 180 SDAERGGGSG AEGLQLLGSS GIGGSSDDGS GDAAAATAWI DGIIRDLISS ATAEVSIPQL 240 IHNVREVIHP CNPGLAAVLE YRLRSLTLVP PALPALPCGG APEPSEKRRR PAPVLPELRP 300 PLKRIDPSPS FQSSAAGSSS QHLPSWEEPN PNTNPSYSRL PNPQQPQPQR SSASASSDEA 360 TAATAAAAAA AAKERKEEIR QQKRDEEGLH LLTLLLQCAE AVAADNLEEA NRLLLEISEL 420 STPFGTSAQR VAAYFSEAMS ARLVSSCLGL YAPLPSVPHR SRLVSAFQVF NGISPFVKFS 480 HFTANQAIQE AFEREDRVHI IDLDIMQGLQ WPGLFHILAS RPGGPPRVRL TGLGSSIEAL 540 EATGKRLSDF AQTLGLPFEF CPVAEKVGNL DPDRLGVNRR EALAVHWLHH SLYDVTGSDT 600 NTLWLLQRLA PKVVTMVEQD LSQTGSFLSR FVEAIHYYSA LFDSLGASYG EDSQERHIVE 660 QQLLSREIRN VLAVGGPART GEVKFGNWRE KLSQSGFRVI SLAGNAAAQA TLLLGMFPSD 720 GYTLVEENGT LKLGWKDLCL LTASAWRPIH PPPSATTTTT LCTSR

Sequence ? help Back to Top

Protein Sequence Length: 765 aa Download sequence Send to blast

MAFSSCLLLP PPSSSHDPPN FSSIPQPTTI STPPLLPHSQ QHQHHHHQQQ QQLEPEELLF  60
YLHLQQQQQR LLQHHQEKLD KMVRKRPASE LDLQAESSAY PNPTRLTRRG NNSSASAALP  120
PGFIGDLQAQ SPLLFEPSLN PNPPTVLLPG AGPSTLLQSL PPQLPAPPAV CGFPGPPLFP  180
SDAERGGGSG AEGLQLLGSS GIGGSSDDGS GDAAAATAWI DGIIRDLISS ATAEVSIPQL  240
IHNVREVIHP CNPGLAAVLE YRLRSLTLVP PALPALPCGG APEPSEKRRR PAPVLPELRP  300
PLKRIDPSPS FQSSAAGSSS QHLPSWEEPN PNTNPSYSRL PNPQQPQPQR SSASASSDEA  360
TAATAAAAAA AAKERKEEIR QQKRDEEGLH LLTLLLQCAE AVAADNLEEA NRLLLEISEL  420
STPFGTSAQR VAAYFSEAMS ARLVSSCLGL YAPLPSVPHR SRLVSAFQVF NGISPFVKFS  480
HFTANQAIQE AFEREDRVHI IDLDIMQGLQ WPGLFHILAS RPGGPPRVRL TGLGSSIEAL  540
EATGKRLSDF AQTLGLPFEF CPVAEKVGNL DPDRLGVNRR EALAVHWLHH SLYDVTGSDT  600
NTLWLLQRLA PKVVTMVEQD LSQTGSFLSR FVEAIHYYSA LFDSLGASYG EDSQERHIVE  660
QQLLSREIRN VLAVGGPART GEVKFGNWRE KLSQSGFRVI SLAGNAAAQA TLLLGMFPSD  720
GYTLVEENGT LKLGWKDLCL LTASAWRPIH PPPSATTTTT LCTSR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	0.0	375	748	3	380	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269\|PubMed:16339910}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010931426.1	0.0	protein SCARECROW 2
Swissprot	Q2Z2E9	0.0	SCR_IPONI; Protein SCARECROW
TrEMBL	A0A2H3XS89	0.0	A0A2H3XS89_PHODC; protein SCARECROW 2-like isoform X1
STRING	XP_008788030.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1371	38	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54220.1	0.0	GRAS family protein