PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010931366.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family B3
Protein Properties Length: 902aa    MW: 99563.6 Da    PI: 7.4659
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010931366.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.13.4e-18368467198
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+kvl+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g+ W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++
  XP_010931366.1 368 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLKIQDVKGKNWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVIFSRID-PEGK 460
                     99**************************555566778***************9989999999***9.********************987.7777 PP

                     .EEEEE- CS
              B3  92 lvvkvfr 98 
                     lv+++++
  XP_010931366.1 461 LVMGFRK 467
                     7777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-30360473IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.93E-20365468IPR015300DNA-binding pseudobarrel domain
CDDcd100177.22E-23366467No hitNo description
SMARTSM010194.5E-21368468IPR003340B3 DNA binding domain
PROSITE profilePS5086311.025368469IPR003340B3 DNA binding domain
PfamPF023621.8E-15368467IPR003340B3 DNA binding domain
PROSITE profilePS5105015.021596646IPR011124Zinc finger, CW-type
PfamPF074961.1E-13601643IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 902 aa     Download sequence    Send to blast
MGSKRCRNAR CGATEPGGEG EWRKGWGLKS GGFATLCDKC GRAYEQLVFC DKFHLNETGW  60
RNCRFCSKPL HCGCIASKSS FDLLDNGGVQ CISCMKNSKC ESAQVPCEVI QELLPQPPQL  120
VLAPSSVSPM DEKEGNDFVA RLTINAGELQ HTSATGERDN CKGSDIQLGS STEGDGHSIL  180
VLAQRESING SFGRIQREQV ALHLGEKGST CFTNKKDGPI GSSLVINKGD RNDTVSDKII  240
YESLAHACLS ISLGTSNSGD MTACLNSKNP QITFPLSNTL NGGRQQNKVL SAFQQVQRSH  300
HLLPMPLRTS SGADSEASKE MLSCMSVARP PAEGRIRNQL LPRYWPRITD QELRQISGDS  360
NSTIVPLFEK VLSASDAGRI GRLVLPKACA EAYFPPISQP EGLPLKIQDV KGKNWVFQFR  420
FWPNNNSRMY VLEGVTPCIQ SMQLQAGDTV IFSRIDPEGK LVMGFRKATN SVSLQDSQIS  480
AFASGAISNE AFFSGVIENL PITDKPGGQS NDGLPLQPLL ALEKKRSRNI GPKSKRLLMD  540
NEDALELKLT WEEAQDLLRP PPSVKPSIVM IEDHEFEEYE DPPVFGKRTI FTARASGGQD  600
QWVQCDDCFK WRRLPVDVLL PSKWMCTDNK WDPKRSSCSV PNEICPTEMQ NLLQQNAEMR  660
RQRIAVSSKH SPPDLEASTS ETLGIGAAPP DNRNQARTLA ATTTKHPRHR PGCTCIVCIQ  720
PPSGKGPKHK PTCMCNVCMT VKRRFATLMM RKKKRQSEQE EAESHKRLLW SSTEETEAHS  780
SFKYVPFQEN AEKPEMSKGY LDLNCHPGHE DHSQSPPARV SMMSLLQEAS RPLDAYLKEN  840
GLASLACEQQ ASSNLQILPQ VSGEREGRTP DESRHSSPCQ ERGSVNADEG DHKPEQVQND  900
AA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-673464752131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1741754KRRFATLMMRKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010931366.10.0B3 domain-containing protein Os07g0679700 isoform X2
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A2H3ZRI80.0A0A2H3ZRI8_PHODC; B3 domain-containing transcription repressor VAL2-like
STRINGXP_008792230.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65193748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]