PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010931331.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

LBD

Protein Properties

Length: 202aa MW: 21665.8 Da PI: 8.5922

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010931331.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.4	1.9e-41	38	137	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l+++p+ +r da++slvyeA++r+rdPvyG++g i++lqqq++ l+ el+ XP_010931331.1 38 PCAACKLLRRRCAQECPFSPYFSPHEPQKFAAVHKVFGASNVSKMLTEVPKAQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQGLEMELQ 132 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_010931331.1 133 VVRAE 137 99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.274	37	138	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.4E-42	38	135	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MSTERERFDE VGKKIKREAD GAVDPTGSPV GTLNTITPCA ACKLLRRRCA QECPFSPYFS 60 PHEPQKFAAV HKVFGASNVS KMLTEVPKAQ RADAANSLVY EANVRLRDPV YGCMGAISAL 120 QQQVQGLEME LQVVRAEILK LKYRQASVHV LPASHAAFLA PGDVSVAAPP SIQTPPPPPA 180 SAASSSTSSI CITPNEKVTY FG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-42	38	140	11	113	LOB family transfactor Ramosa2.1
5ly0_B	1e-42	38	140	11	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010931331.1	1e-148	LOB domain-containing protein 15-like
Swissprot	Q8L5T5	2e-77	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A2H3Y2F6	1e-117	A0A2H3Y2F6_PHODC; LOB domain-containing protein 15-like
STRING	XP_008792197.1	1e-118	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2630	38	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	1e-79	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]