PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010931288.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 682aa    MW: 75475.7 Da    PI: 8.2867
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010931288.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.11.7e-07588637147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +        k+Rt  ++k++w ++
   XP_010931288.1 588 RRPFSVSEVEALVQAVEKLGTGRWRDVKLQAFdnaKHRTYVDLKDKWKTL 637
                      678999********************8877779**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542363.26E-5381464IPR029071Ubiquitin-related domain
PROSITE profilePS5129414.411583642IPR017930Myb domain
SMARTSM007172.9E-7587640IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-10588638IPR009057Homeodomain-like
SuperFamilySSF466899.87E-16589670IPR009057Homeodomain-like
CDDcd116605.42E-17589639No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MVFKKKFECS SNGYQVPAMP QIPISAKGKR SVRRKVVDNQ MCAFDLLIAV ARKILERDNS  60
STVNSIVGNS NQNVKQEQLD EEKFCKDEAF YQVSCNESTS TSELPIQRQV IQTLEERSQI  120
PNATASGPTS AIVKSDALNK DTCTGDSIAN GSKEEFAYSL GTTAKKCCTE SHSPGSPESC  180
DADMVDEIKT PFLVEQHEAE TGMFKNIQHA WNLDNPKELD AKPPALSSSD SSIEMPLHGH  240
HIPPISSFPI CEDNMELAVD RDDDENSFGC TNPSTITSKA LKPQYHKIRK LFSRTDVETK  300
PASHSRKICH ARRRTQRSLF KRRKVFEHCS ISPSDGGISS KGFCNPFEKE INYNTNNSYA  360
VLHGANCTSS SATGQIALHK SEDFHVKLSI KSFKVPELFI EIPETATVGS LKRTVMEAVT  420
AILGGGLHVG VLLQGKKVRD DNKTLLQAGI SHVDKMDNLV FMLEPSSRGA SLPVTNLEYP  480
RPLFPCDATE PLAGLPAVSP APAPEIFNPS PEPQLNSALN FSESDHDSVY SPMDTKLLNK  540
APAAPPTPPT TASNSRALVP VPAMRIEALS MVPLRKPRRS ELPQRRIRRP FSVSEVEALV  600
QAVEKLGTGR WRDVKLQAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR  660
VLATHAYWSQ QQAKLHFKPP LP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A4e-565756794108Telomere binding protein TBP1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010931288.10.0telomere repeat-binding protein 3 isoform X8
TrEMBLA0A2H3X1W80.0A0A2H3X1W8_PHODC; telomere repeat-binding protein 5-like isoform X2
STRINGXP_008777057.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-96TRF-like 2