PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010931287.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB_related | ||||||||
Protein Properties | Length: 683aa MW: 75546.8 Da PI: 8.2867 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.1 | 1.7e-07 | 589 | 638 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + k+Rt ++k++w ++ XP_010931287.1 589 RRPFSVSEVEALVQAVEKLGTGRWRDVKLQAFdnaKHRTYVDLKDKWKTL 638 678999********************8877779**************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54236 | 4.07E-5 | 384 | 465 | IPR029071 | Ubiquitin-related domain |
PROSITE profile | PS51294 | 14.411 | 584 | 643 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-7 | 588 | 641 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-10 | 589 | 639 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 5.43E-17 | 590 | 640 | No hit | No description |
SuperFamily | SSF46689 | 9.87E-16 | 590 | 671 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 683 aa Download sequence Send to blast |
MVFKKKFECS SNGYQVPAMP QIPISAKGKR SVRRKVVDNQ MCAFDLLIAV ARKILERDNS 60 STVNSIVGNS NQNVKQEQLD EEKFCKDEAF YQVSCNESTS TSELPIQRQV IQTLEERSQI 120 PNATASGPTS AIVKSDALNK DTCTGDSIAN GSKEEFAYSL GTTAKKCCTE SHSPGSPESC 180 DADMVDEIKT PFLVEQHEAE TGMFKNIQHA WNLDNPKELD AKPPALSSSD SSIEMPLHGH 240 HIPPISSFPI CEDNMELAVD RDDDENSFGC TNPSTITSKA LKPQYHKIRK LFSRTDVETK 300 PASHSRKICH ARRRTQRSLF KRRKVFEHCS ISPSDGGISS KGFCNPFEKE INYNTNNSYA 360 VLHGANCTSS SATGQIALHK SEDFHAVKLS IKSFKVPELF IEIPETATVG SLKRTVMEAV 420 TAILGGGLHV GVLLQGKKVR DDNKTLLQAG ISHVDKMDNL VFMLEPSSRG ASLPVTNLEY 480 PRPLFPCDAT EPLAGLPAVS PAPAPEIFNP SPEPQLNSAL NFSESDHDSV YSPMDTKLLN 540 KAPAAPPTPP TTASNSRALV PVPAMRIEAL SMVPLRKPRR SELPQRRIRR PFSVSEVEAL 600 VQAVEKLGTG RWRDVKLQAF DNAKHRTYVD LKDKWKTLVH TARISPQQRR GEPVPQELLD 660 RVLATHAYWS QQQAKLHFKP PLP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 4e-56 | 576 | 680 | 4 | 108 | Telomere binding protein TBP1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010931287.1 | 0.0 | telomere repeat-binding protein 3 isoform X7 | ||||
TrEMBL | A0A2H3X1W2 | 0.0 | A0A2H3X1W2_PHODC; telomere repeat-binding protein 5-like isoform X1 | ||||
STRING | XP_008777057.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07540.1 | 5e-98 | TRF-like 2 |