PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010931267.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 548aa    MW: 59936.2 Da    PI: 8.8784
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010931267.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92e-1762108148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT++Ede l +av+ + g++Wk+Ia+ ++  Rt+ qc +rwqk+l
   XP_010931267.1  62 KGGWTPQEDETLRKAVETYKGRCWKKIAEFFP-DRTEVQCLHRWQKVL 108
                      688*****************************.************986 PP

2Myb_DNA-binding52.51.1e-16114165145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwq 45 
                      +g+WT eEde+++++v+++G+  W+ Ia+ ++         Rt++++k++w+
   XP_010931267.1 114 KGPWTLEEDEKIINLVQKYGPTKWSVIAKSLPgrigkqcRERTDNSIKNHWN 165
                      79******************************77777776677777777776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.67857108IPR017930Myb domain
SuperFamilySSF466893.81E-1160105IPR009057Homeodomain-like
SMARTSM007179.6E-1661110IPR001005SANT/Myb domain
PfamPF002495.6E-1662108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2264115IPR009057Homeodomain-like
CDDcd001672.81E-1465108No hitNo description
SuperFamilySSF466892.42E-2391172IPR009057Homeodomain-like
PROSITE profilePS5129424.023109172IPR017930Myb domain
SMARTSM007175.1E-15113170IPR001005SANT/Myb domain
PfamPF002492.2E-15114155IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-22116172IPR009057Homeodomain-like
CDDcd001671.47E-13116155No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MEVMAAVKIE QSCIENKQSA AASSSSLSEG SYGFSRMSPA VSSPATSSPS HRRTSGPIRR  60
AKGGWTPQED ETLRKAVETY KGRCWKKIAE FFPDRTEVQC LHRWQKVLNP ELIKGPWTLE  120
EDEKIINLVQ KYGPTKWSVI AKSLPGRIGK QCRERTDNSI KNHWNSSLKK KLDLYLATGK  180
LPPVPKPGEH SGSKDIGNPA SGQLFLCLNK GSDTSTKALS ESAGSTHSLL PSELCKLEER  240
REWLGPSTMQ VSCSETFTGA SIREPNSSTA EYQAQATQVD NICNGSDPGE RFGNDSNTGE  300
IDKDNKIPGI TLPSELSSTF GSLYYEPPQL EDLGVSLAST LLNTYDPNQQ SYNSRIGTSP  360
LGYFTPPFVS GKSSGQHSAE SILKNAARSF PNTPSILRRR KREANTPLPP DRTVQTDQIK  420
IQDGSCTPIE GKYGSDQQPF KSSNLLRASR CNDGGIVPYN GKIFNVSPPY RLRSKRTSII  480
KSVEKQLDFT SREDNIDGNA KSLSLAINSS SRSADCNCNL PSMKGRKLSE CPVGLEILAS  540
DSALIQLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-41611725159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-41611725159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010931267.10.0transcription factor MYB3R-3 isoform X2
TrEMBLA0A2H3X1D00.0A0A2H3X1D0_PHODC; transcription factor MYB3R-3-like isoform X1
STRINGXP_008776835.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.26e-93myb domain protein 3r-5