PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010931267.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB | ||||||||
Protein Properties | Length: 548aa MW: 59936.2 Da PI: 8.8784 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.9 | 2e-17 | 62 | 108 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT++Ede l +av+ + g++Wk+Ia+ ++ Rt+ qc +rwqk+l XP_010931267.1 62 KGGWTPQEDETLRKAVETYKGRCWKKIAEFFP-DRTEVQCLHRWQKVL 108 688*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 52.5 | 1.1e-16 | 114 | 165 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwq 45 +g+WT eEde+++++v+++G+ W+ Ia+ ++ Rt++++k++w+ XP_010931267.1 114 KGPWTLEEDEKIINLVQKYGPTKWSVIAKSLPgrigkqcRERTDNSIKNHWN 165 79******************************77777776677777777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.678 | 57 | 108 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.81E-11 | 60 | 105 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.6E-16 | 61 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-16 | 62 | 108 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-22 | 64 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.81E-14 | 65 | 108 | No hit | No description |
SuperFamily | SSF46689 | 2.42E-23 | 91 | 172 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.023 | 109 | 172 | IPR017930 | Myb domain |
SMART | SM00717 | 5.1E-15 | 113 | 170 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-15 | 114 | 155 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-22 | 116 | 172 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.47E-13 | 116 | 155 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 548 aa Download sequence Send to blast |
MEVMAAVKIE QSCIENKQSA AASSSSLSEG SYGFSRMSPA VSSPATSSPS HRRTSGPIRR 60 AKGGWTPQED ETLRKAVETY KGRCWKKIAE FFPDRTEVQC LHRWQKVLNP ELIKGPWTLE 120 EDEKIINLVQ KYGPTKWSVI AKSLPGRIGK QCRERTDNSI KNHWNSSLKK KLDLYLATGK 180 LPPVPKPGEH SGSKDIGNPA SGQLFLCLNK GSDTSTKALS ESAGSTHSLL PSELCKLEER 240 REWLGPSTMQ VSCSETFTGA SIREPNSSTA EYQAQATQVD NICNGSDPGE RFGNDSNTGE 300 IDKDNKIPGI TLPSELSSTF GSLYYEPPQL EDLGVSLAST LLNTYDPNQQ SYNSRIGTSP 360 LGYFTPPFVS GKSSGQHSAE SILKNAARSF PNTPSILRRR KREANTPLPP DRTVQTDQIK 420 IQDGSCTPIE GKYGSDQQPF KSSNLLRASR CNDGGIVPYN GKIFNVSPPY RLRSKRTSII 480 KSVEKQLDFT SREDNIDGNA KSLSLAINSS SRSADCNCNL PSMKGRKLSE CPVGLEILAS 540 DSALIQLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 1e-41 | 61 | 172 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-41 | 61 | 172 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00482 | DAP | Transfer from AT5G02320 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010931267.1 | 0.0 | transcription factor MYB3R-3 isoform X2 | ||||
TrEMBL | A0A2H3X1D0 | 0.0 | A0A2H3X1D0_PHODC; transcription factor MYB3R-3-like isoform X1 | ||||
STRING | XP_008776835.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 6e-93 | myb domain protein 3r-5 |