PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010931265.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 591aa MW: 65018.1 Da PI: 8.9793 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.7 | 2.2e-17 | 62 | 108 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT++Ede l +av+ + g++Wk+Ia+ ++ Rt+ qc +rwqk+l XP_010931265.1 62 KGGWTPQEDETLRKAVETYKGRCWKKIAEFFP-DRTEVQCLHRWQKVL 108 688*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 61.2 | 2.1e-19 | 114 | 160 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEde+++++v+++G+ W+ Ia+ ++ gR +kqc++rw+++l XP_010931265.1 114 KGPWTLEEDEKIINLVQKYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 160 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 57.7 | 2.6e-18 | 166 | 209 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT eE++ l +a++++G++ W+ Ia+ ++ gRt++++k++w++ XP_010931265.1 166 KDAWTVEEELTLMNAHRMHGNK-WAEIAKLLP-GRTDNSIKNHWNS 209 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.678 | 57 | 108 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.01E-15 | 58 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.6E-16 | 61 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.2E-16 | 62 | 108 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.3E-23 | 64 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.98E-14 | 65 | 108 | No hit | No description |
PROSITE profile | PS51294 | 30.901 | 109 | 164 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.62E-32 | 111 | 207 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-18 | 113 | 162 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-18 | 114 | 160 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.16E-16 | 116 | 160 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-26 | 117 | 163 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.4E-23 | 164 | 215 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-16 | 165 | 213 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 23.388 | 165 | 215 | IPR017930 | Myb domain |
Pfam | PF00249 | 6.5E-17 | 166 | 209 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.39E-12 | 168 | 211 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 591 aa Download sequence Send to blast |
MEVMAAVKIE QSCIENKQSA AASSSSLSEG SYGFSRMSPA VSSPATSSPS HRRTSGPIRR 60 AKGGWTPQED ETLRKAVETY KGRCWKKIAE FFPDRTEVQC LHRWQKVLNP ELIKGPWTLE 120 EDEKIINLVQ KYGPTKWSVI AKSLPGRIGK QCRERWHNHL NPLIKKDAWT VEEELTLMNA 180 HRMHGNKWAE IAKLLPGRTD NSIKNHWNSS LKKKLDLYLA TGKLPPVPKP GEHSGSKDIG 240 NPASGQLFLC LNKGSDTSTK ALSESAGSTH SLLPSELCKL EERREWLGPS TMQVSCSETF 300 TGASIREPNS STAEYQAQAT QVDNICNGSD PGERFGNDSN TGEIDKDNKI PGITLPSELS 360 STFGSLYYEP PQLEDLGVSL ASTLLNTYDP NQQSYNSRIG TSPLGYFTPP FVSGKSSGQH 420 SAESILKNAA RSFPNTPSIL RRRKREANTP LPPDRTVQTD QIKIQDGSCT PIEGKYGSDQ 480 QPFKSSNLLR ASRCNDGGIV PYNGKIFNVS PPYRLRSKRT SIIKSVEKQL DFTSREDNID 540 GNAKSLSLAI NSSSRSADCN CNLPSMKGRK LSECPVGLEI LASDSALIQL S |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 1e-71 | 61 | 215 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-71 | 61 | 215 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00482 | DAP | Transfer from AT5G02320 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010931265.1 | 0.0 | transcription factor MYB3R-3 isoform X1 | ||||
Refseq | XP_010931266.1 | 0.0 | transcription factor MYB3R-3 isoform X1 | ||||
Swissprot | Q6R032 | 1e-143 | MB3R5_ARATH; Transcription factor MYB3R-5 | ||||
TrEMBL | A0A2H3X1D0 | 0.0 | A0A2H3X1D0_PHODC; transcription factor MYB3R-3-like isoform X1 | ||||
STRING | XP_008776835.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3099 | 38 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G02320.2 | 1e-132 | myb domain protein 3r-5 |
Publications ? help Back to Top | |||
---|---|---|---|
|