PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010931240.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

GRAS

Protein Properties

Length: 752aa MW: 84755.2 Da PI: 6.0843

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010931240.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	398.7	6.2e-122	376	747	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++ L++cA+av+++d ++a +lL+++++++sp+gd+ qRla+yf+ +L+arla+++s++y++l++++ts ++ l+a++lf ++P+ k+sh XP_010931240.1 376 LRTILVHCAQAVATDDRRNAGELLKQIRQHSSPHGDAAQRLAHYFADGLQARLAGTGSQIYHSLAAKRTS---ATDILKAYHLFMSACPFKKISH 467 5789***********************************************************99999...9***************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 + Nq+Il+av +++rvHi+D++i +G+QWp++lq L+sRp+gpps+RiTg++ p++g +e++eetg+rLa++++++++pfe+++ +a ++e+ XP_010931240.1 468 FFSNQTILDAVGKARRVHIVDYGIYYGFQWPCFLQCLSSRPGGPPSVRITGIDLPQPGfrPRERIEETGRRLADYCRSFQIPFEYHA-IAAKWET 561 *****************************************************9*************************.799 PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 +++e+L+++++E+++Vn+ ++l +++de+v ++s+r++vL+++++++P+v+++ + ++++ F++rf eal ++salfd+le+++pre+++r XP_010931240.1 562 VRVEDLNIDKDEVVVVNCLYRLRNVVDETVVVDSPRNKVLNTIRKMNPDVFIHGIVNGCYGAPFFVTRFREALFHFSALFDMLETTVPREDDQRL 656 ******************************************************************************************* PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +Ere+ gre+ nv++ceg er+er et+++W+ r +aGF+ +pl+ +++k+a+ ++ ++ + + v+e+sg+l++gWk+r ++++S W+ XP_010931240.1 657 LIEREICGREALNVISCEGLERVERPETYKQWHVRNLRAGFTLLPLKPEIMKKARDKMKACYHKDFVVDEDSGWLLQGWKGRIIYALSTWK 747 **********************************************************888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	70.339	350	727	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.1E-119	376	747	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 752 aa Download sequence Send to blast
MVMGTGIRDL RGMTSEFKYD QLFSTSSFTP GVPPMLDNNS FIDLQNIPFN PIISGPTSSA 60 PTADATTSSA EADSAEDSEI FSDIVLSYIN QMLMDEDMDD KFEQFQEHPA LLAAEKPFYD 120 ILAENHSPPP DHPPLYSNYS SESPDDGVNN HYGSSSCSNS VVVDGSWPCD SVEYQQLQTH 180 PASVDYSSQS SFSSTNSVGN IVEGFDESLL NSLALSDLLT QSQPAWEQFR RGVEEARKFL 240 PGEDKLVIHL EADGVSIPQQ PRRENELREV KAEKEEREYL SQGSRGRKNR HSDDLELVEG 300 RSNKQSAVFP EQTVRTAMFD MVLLHNEQCT KGPCELRAAM EKEKEASKSS QSNQSRGSGG 360 GKGRGKRQPK REVVDLRTIL VHCAQAVATD DRRNAGELLK QIRQHSSPHG DAAQRLAHYF 420 ADGLQARLAG TGSQIYHSLA AKRTSATDIL KAYHLFMSAC PFKKISHFFS NQTILDAVGK 480 ARRVHIVDYG IYYGFQWPCF LQCLSSRPGG PPSVRITGID LPQPGFRPRE RIEETGRRLA 540 DYCRSFQIPF EYHAIAAKWE TVRVEDLNID KDEVVVVNCL YRLRNVVDET VVVDSPRNKV 600 LNTIRKMNPD VFIHGIVNGC YGAPFFVTRF REALFHFSAL FDMLETTVPR EDDQRLLIER 660 EICGREALNV ISCEGLERVE RPETYKQWHV RNLRAGFTLL PLKPEIMKKA RDKMKACYHK 720 DFVVDEDSGW LLQGWKGRII YALSTWKPNN AS

Sequence ? help Back to Top

Protein Sequence Length: 752 aa Download sequence Send to blast

MVMGTGIRDL RGMTSEFKYD QLFSTSSFTP GVPPMLDNNS FIDLQNIPFN PIISGPTSSA  60
PTADATTSSA EADSAEDSEI FSDIVLSYIN QMLMDEDMDD KFEQFQEHPA LLAAEKPFYD  120
ILAENHSPPP DHPPLYSNYS SESPDDGVNN HYGSSSCSNS VVVDGSWPCD SVEYQQLQTH  180
PASVDYSSQS SFSSTNSVGN IVEGFDESLL NSLALSDLLT QSQPAWEQFR RGVEEARKFL  240
PGEDKLVIHL EADGVSIPQQ PRRENELREV KAEKEEREYL SQGSRGRKNR HSDDLELVEG  300
RSNKQSAVFP EQTVRTAMFD MVLLHNEQCT KGPCELRAAM EKEKEASKSS QSNQSRGSGG  360
GKGRGKRQPK REVVDLRTIL VHCAQAVATD DRRNAGELLK QIRQHSSPHG DAAQRLAHYF  420
ADGLQARLAG TGSQIYHSLA AKRTSATDIL KAYHLFMSAC PFKKISHFFS NQTILDAVGK  480
ARRVHIVDYG IYYGFQWPCF LQCLSSRPGG PPSVRITGID LPQPGFRPRE RIEETGRRLA  540
DYCRSFQIPF EYHAIAAKWE TVRVEDLNID KDEVVVVNCL YRLRNVVDET VVVDSPRNKV  600
LNTIRKMNPD VFIHGIVNGC YGAPFFVTRF REALFHFSAL FDMLETTVPR EDDQRLLIER  660
EICGREALNV ISCEGLERVE RPETYKQWHV RNLRAGFTLL PLKPEIMKKA RDKMKACYHK  720
DFVVDEDSGW LLQGWKGRII YALSTWKPNN AS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-54	382	750	25	382	Protein SCARECROW
5b3h_A	1e-54	382	750	24	381	Protein SCARECROW
5b3h_D	1e-54	382	750	24	381	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010931240.1	0.0	scarecrow-like protein 9
TrEMBL	A0A2H3X212	0.0	A0A2H3X212_PHODC; scarecrow-like protein 9
STRING	XP_008777105.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1505	38	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein