PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010931211.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 236aa    MW: 27104.6 Da    PI: 7.3904
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010931211.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.3e-181663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd ll ++v+++G g+W+ ++++ g++R++k+c++rw++yl
   XP_010931211.1 16 KGAWSEEEDRLLRKCVEKYGEGNWRHVPQRAGLRRCRKSCRLRWLNYL 63
                     79********************************************97 PP
2Myb_DNA-binding54.33e-1769114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      r ++++eE +l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
   XP_010931211.1  69 REKFSEEETDLIIRLHKLLGNR-WSLIAGRLP-GRTANDIKNYWNTHL 114
                      789*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.8841167IPR017930Myb domain
SuperFamilySSF466894.93E-3013110IPR009057Homeodomain-like
SMARTSM007171.3E-151565IPR001005SANT/Myb domain
PfamPF002491.1E-171663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-221770IPR009057Homeodomain-like
CDDcd001671.09E-111863No hitNo description
PROSITE profilePS5129420.02668118IPR017930Myb domain
SMARTSM007172.8E-1668116IPR001005SANT/Myb domain
PfamPF002495.6E-1669114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-2471118IPR009057Homeodomain-like
CDDcd001671.60E-1171114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGNLRAEVQR PAGVRKGAWS EEEDRLLRKC VEKYGEGNWR HVPQRAGLRR CRKSCRLRWL  60
NYLSPRINRE KFSEEETDLI IRLHKLLGNR WSLIAGRLPG RTANDIKNYW NTHLGKKVEV  120
ENKKAEPSAD AKVIKPRPWK VPLQWFWSED QQSCGSQQPQ EEFGIPELPT ISENDEAWLN  180
SIMNGDRENS AVPDVGNGST MNLQNEFGIG GLEENRDGAV FLEGVLGWDD LLWATI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23161207110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010931211.11e-173transcription factor MYB1 isoform X1
SwissprotQ9FNV91e-55MY113_ARATH; Transcription factor MYB113
TrEMBLA0A068FIV31e-171A0A068FIV3_ELAGV; Virescens R2R3-MYB
STRINGXP_008804377.11e-103(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2550025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.14e-58myb domain protein 113
Publications ? help Back to Top
  1. Singh R, et al.
    The oil palm VIRESCENS gene controls fruit colour and encodes a R2R3-MYB.
    Nat Commun, 2014. 5: p. 4106
    [PMID:24978855]
  2. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  3. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]