PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010931159.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 392aa    MW: 41198.6 Da    PI: 5.1425
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010931159.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.53.2e-1878123147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+W++eEd +l ++v+++G ++W++Iar ++ gR++k+c++rw + 
   XP_010931159.1  78 KGPWSPEEDVILSNLVNKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 123
                      79******************************.***********985 PP

2Myb_DNA-binding56.18.4e-18130174147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T+eEd +++ a++ +G++ W++Iar +  gRt++ +k++w++ 
   XP_010931159.1 130 RKPFTEEEDRIIIAAHAIHGNK-WASIARLLE-GRTDNAIKNHWNST 174
                      789*******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.29873124IPR017930Myb domain
SuperFamilySSF466898.63E-3175171IPR009057Homeodomain-like
SMARTSM007171.3E-1577126IPR001005SANT/Myb domain
PfamPF002492.5E-1778123IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-2679131IPR009057Homeodomain-like
CDDcd001676.09E-1580122No hitNo description
PROSITE profilePS5129426.696125179IPR017930Myb domain
SMARTSM007174.8E-17129177IPR001005SANT/Myb domain
PfamPF002493.5E-15130174IPR001005SANT/Myb domain
CDDcd001675.00E-13132175No hitNo description
Gene3DG3DSA:1.10.10.604.7E-23132178IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
METEPETAAD FDPPPPSSSP PPPSPPPGPT AAVVESAAKS PAADGGTNEP GAAGAEGSAS  60
GGGGGGGGGV APAEDRVKGP WSPEEDVILS NLVNKFGARN WSLIARGIPG RSGKSCRLRW  120
CNQLDPYVKR KPFTEEEDRI IIAAHAIHGN KWASIARLLE GRTDNAIKNH WNSTLRRRCF  180
QAEQYKAAAC DALQDASAEK AKGSSEESPS IGDVNSFKSL EGRDVNSKEN MSDNSEDIVN  240
ARDDSSEVKD PPYLFRPVAR VSAFHPYNHV SGQSCGSLLS RPVQMHGLLS QAFQTGAGIS  300
KLLDGNCSEP QVPPRCGHGC GSIENDSHPQ NSLLGPEFVE FVELPAISNQ ELFSVASELS  360
SIAWLKSGLQ VGSSCMYGGS PSPVAPPGGH VQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-41751784107B-MYB
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010931159.10.0transcription factor MYB1
SwissprotQ425754e-85MYB1_ARATH; Transcription factor MYB1
TrEMBLA0A2H3XLM90.0A0A2H3XLM9_PHODC; transcription factor MYB1-like
STRINGXP_008785463.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.11e-87myb domain protein 109
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]