PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010931156.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 430aa    MW: 46863.4 Da    PI: 7.527
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010931156.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.81.6e-10113144132
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg 32 
                      +g WT eEd  lv++vkq+G + W+ Ia+++ 
   XP_010931156.1 113 KGQWTSEEDSMLVRLVKQHGVRKWSQIAKKLK 144
                      799**************************985 PP
2Myb_DNA-binding58.91.1e-18144186145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +  WT+eE+ llv+a+k+ G++ W+ Ia++++ gR+++++k++w+
   XP_010931156.1 144 KETWTEEEERLLVEAHKKVGNR-WAEIAKYIP-GRSENSIKNHWN 186
                      578*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-11110144IPR009057Homeodomain-like
SuperFamilySSF466892.44E-21111185IPR009057Homeodomain-like
SMARTSM007173112144IPR001005SANT/Myb domain
PfamPF002497.2E-8113143IPR001005SANT/Myb domain
PROSITE profilePS5129423.723139193IPR017930Myb domain
PfamPF002492.8E-17144186IPR001005SANT/Myb domain
SMARTSM007179.6E-14145191IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-18146187IPR009057Homeodomain-like
CDDcd001673.61E-15146186No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MEKSPPPISQ PAPAPPFTPL KRFLASSCEG ELRIEKNPVD KLEQSAETPP CSGATGTHPP  60
NGILSNDFSL YGGIVGCSGK GAVTRRENYG ERKGMRSSSS TVAAAAAAAS VVKGQWTSEE  120
DSMLVRLVKQ HGVRKWSQIA KKLKETWTEE EERLLVEAHK KVGNRWAEIA KYIPGRSENS  180
IKNHWNATRR RQNAKRKSKR KTAQGGGCGP SVLQEYIASR MLDLQDNCTT TKITPSTSQP  240
RPPHQFRITF PNVLQEPLSA HDSSMLTTTQ MEDCIPSIEE FLNQSTTGIT AEEGGFHVGD  300
VQDPRVLDSL DILDFDQYRN YSIASVDQRM PLAPPPGLDF FHGEANGLTT AGSDGTSTNS  360
STHLYSDSYI SYLLNGAPSF STDAFAGTGT PIPKDQPSSS CKKRELDLIE MLSLQLSRSQ  420
SQTSSSNGSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C8e-281111922104C-Myb DNA-Binding Domain
1msf_C8e-281111922104C-Myb DNA-Binding Domain
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010931156.10.0transcription factor MYB119-like
STRINGXP_008785587.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2549955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11050.12e-28myb domain protein 64