PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010931110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | NAC | ||||||||
Protein Properties | Length: 240aa MW: 27066.8 Da PI: 5.4442 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 144 | 8.2e-45 | 4 | 134 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k...kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrF Pt+eel+++yL++k+e+++ ++e+vi+ vd+y+++P +Lp + + + + ++w+fF++r++++a+g ++ r+t sgyWkatg+ XP_010931110.1 4 LPPGFRFYPTEEELLNFYLRNKIENTRQDMERVIPAVDVYSYDPVQLPpMsgeA-SIqDPEQWFFFCPRQEREAQGGKPARTTPSGYWKATGSPS 97 79****************************99***************9644532.2224569********************************* PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyr 127 v+s++++ +g+kkt+vfy+grap g+kt+W m+ey+ XP_010931110.1 98 YVFSSRNQRIGVKKTMVFYTGRAPYGTKTKWKMNEYK 134 ************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-48 | 2 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 48.548 | 4 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.9E-25 | 5 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MSDLPPGFRF YPTEEELLNF YLRNKIENTR QDMERVIPAV DVYSYDPVQL PPMSGEASIQ 60 DPEQWFFFCP RQEREAQGGK PARTTPSGYW KATGSPSYVF SSRNQRIGVK KTMVFYTGRA 120 PYGTKTKWKM NEYKAFEEAS SSTSSTPPRL RNEFSVCRVY IKSGTLRSFD RRPSAAVAMN 180 TDQSQRNPEA SSSSANPHVQ ADGTSSQGSS SSGDDGSQPL AADGTFDWNE YINSEPFFWE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-36 | 4 | 162 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-36 | 4 | 162 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-36 | 4 | 162 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-36 | 4 | 162 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-36 | 4 | 162 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-36 | 4 | 162 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-36 | 4 | 162 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-36 | 4 | 162 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-36 | 4 | 162 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-36 | 4 | 162 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-36 | 4 | 162 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-36 | 4 | 162 | 20 | 168 | NAC domain-containing protein 19 |
4dul_A | 1e-36 | 4 | 162 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-36 | 4 | 162 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010931110.1 | 1e-179 | NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 1e-73 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A2H3WZR8 | 1e-147 | A0A2H3WZR8_PHODC; NAC domain-containing protein 90-like | ||||
STRING | XP_008776160.1 | 1e-148 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44350.2 | 5e-74 | NAC domain containing protein 61 |
Publications ? help Back to Top | |||
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