PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010930928.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | ARF | ||||||||
Protein Properties | Length: 544aa MW: 59301.3 Da PI: 7.1096 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 66 | 5.4e-21 | 119 | 220 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+ltpsd+++ g +++p+ ae++ ++ + lt++d++g++W++++i+r+ + r++lt+GW++F +a++L +gD +vF +++ XP_010930928.1 119 FVKALTPSDANNGGGFSMPRFGAESIfppldmaAVPPVQ--NLTIRDLHGKVWTFRHIFRGVPPRHLLTTGWSRFSDAKKLVAGDALVFI--KKR 209 89****************************996444445..6************************************************..446 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+v+++r+ XP_010930928.1 210 DHQLYVGIRRA 220 6677****997 PP | |||||||
2 | Auxin_resp | 78.2 | 2e-26 | 274 | 352 | 6 | 83 |
Auxin_resp 6 stksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 +++ +Fevv++P as+++Fvv vekv++al+v++ vGmR++m++e e ss++r+ +Gtv+ +++ d+ rW+ S+Wr+L+ XP_010930928.1 274 RMGRPFEVVHYPMASAADFVVGVEKVNAALRVPWFVGMRVRMSVEIEGSSRTRVfQGTVSEITAQDQDRWSLSPWRVLQ 352 5789***********************************************9999**********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.22E-26 | 117 | 222 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.3E-33 | 118 | 222 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.3E-18 | 119 | 220 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.252 | 119 | 221 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.80E-20 | 119 | 219 | No hit | No description |
SMART | SM01019 | 8.0E-17 | 119 | 221 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.7E-23 | 274 | 352 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 544 aa Download sequence Send to blast |
MAMNASTELP VVDPQVWHAC AGTAAKLPPV GSLVYYFPQG HAEQAPSLPD FPTVSAAGGR 60 LPSHFLCRAA AIGFHAEPDT DEVFARIVLE PCSTPPPPLS PEASSSSVEE PDDGGAVVFV 120 KALTPSDANN GGGFSMPRFG AESIFPPLDM AAVPPVQNLT IRDLHGKVWT FRHIFRGVPP 180 RHLLTTGWSR FSDAKKLVAG DALVFIKKRD HQLYVGIRRA PRFSSRGPQA SLPPAAAPRD 240 KRLEVHVGAR HGFSRNDRGR VPAEVVVEAL RLGRMGRPFE VVHYPMASAA DFVVGVEKVN 300 AALRVPWFVG MRVRMSVEIE GSSRTRVFQG TVSEITAQDQ DRWSLSPWRV LQVAWDEAGV 360 LQNVHSVSPW QVDLDSATPQ MQTLNPPTRR PGILQCFDLL MDAAGRMSSP MTEKSDTIMA 420 STAPSLLSYD MFPAGMQGAR HNSVSIPNFP SFAPSNTHNL YLDNQFSNDV QQKTTEVSKE 480 LNVASTSQSE SSSPLSQGSI HFQGMELPAS AVRNPNEEDI SPPFKLFGQI IHIVQPPDAD 540 KRYK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 3e-78 | 4 | 380 | 43 | 395 | Auxin response factor 5 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010930928.1 | 0.0 | auxin response factor 18-like | ||||
TrEMBL | A0A3Q0HUE6 | 0.0 | A0A3Q0HUE6_PHODC; Auxin response factor | ||||
STRING | XP_008781650.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP516 | 37 | 152 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 1e-111 | auxin response factor 16 |