PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010930864.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB_related | ||||||||
Protein Properties | Length: 685aa MW: 72165.1 Da PI: 5.0664 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.2 | 2.2e-09 | 200 | 244 | 1 | 44 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 r++WT+eEd l+ av++ G g+W+ I + Rt+ q+ rw XP_010930864.1 200 RQAWTKEEDMELIAAVQKCGEGNWSNILKGDFkHDRTASQLSQRW 244 89************************9984334677777777777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.276 | 195 | 252 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-15 | 196 | 252 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.9E-13 | 198 | 250 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.3E-10 | 199 | 250 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-8 | 200 | 245 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.08E-14 | 201 | 249 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 685 aa Download sequence Send to blast |
MGSKKKGSIS EDDVSILLQR YSATSILSLL QEISQFAGPK IDWNALVKRT STGITNAREY 60 QMLWRHLAYH DKLLDKVEDR SEPLDDDSDL EFELEAFPAA SAEAVSDATT CAKILISSGS 120 SRESGPISRT NLEASLTRNL PDNQTPHDPS DKQQLAHTAG GTNAVVPRSV QKQPLATKRS 180 AEVSDGNGSA GSGLRAKRRR QAWTKEEDME LIAAVQKCGE GNWSNILKGD FKHDRTASQL 240 SQRWATIQRR QANLNAGSSN KTVNSTRSEE RLAAQKAFSL AVDMPMTGSL SISAILSGST 300 QSNTPPSSAT LSASVSEALP ASVPLQASTQ ATSQKVASNT SNKPRTIPKK TTAPSKPSVG 360 PNPLIQAAAF AAGGRIATPS TAASLFKAAQ SKSAVHIRPG GCSSPKSPIM TAKSSPATNM 420 VGSQPPSVRY AQPAVTMPAP AVASSVLSST MPRHGMQQLQ VFSQRTTSNP LTSCAAVPNL 480 SAPPILSESK PPADSQEIAE SNSDIAFPVI PAIDVDELLA EEVKDADELE LDGAVAQNHQ 540 TELLSLDVGE NDNNIINNTA CGMQQAIAGG MDISKSQTDE NQTVTNKTVS PDTGAAENKA 600 MEIDVGGSQI PVEEGTKLAS NSQSLNVVSS HTQIVAQEQL AGTEAVVDEV KQSCIQVEQH 660 AVLEDIASDN KSSVDDEAGS GSKQD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010930864.1 | 0.0 | uncharacterized protein LOC105051919 | ||||
TrEMBL | A0A2H3XBV2 | 0.0 | A0A2H3XBV2_PHODC; uncharacterized protein LOC103701275 | ||||
STRING | XP_008781504.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4684 | 37 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09710.1 | 2e-57 | MYB_related family protein |