PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010930864.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 685aa    MW: 72165.1 Da    PI: 5.0664
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010930864.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.22.2e-09200244144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                      r++WT+eEd  l+ av++ G g+W+ I +      Rt+ q+  rw
   XP_010930864.1 200 RQAWTKEEDMELIAAVQKCGEGNWSNILKGDFkHDRTASQLSQRW 244
                      89************************9984334677777777777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.276195252IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-15196252IPR009057Homeodomain-like
SuperFamilySSF466897.9E-13198250IPR009057Homeodomain-like
SMARTSM007173.3E-10199250IPR001005SANT/Myb domain
PfamPF002495.2E-8200245IPR001005SANT/Myb domain
CDDcd116601.08E-14201249No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MGSKKKGSIS EDDVSILLQR YSATSILSLL QEISQFAGPK IDWNALVKRT STGITNAREY  60
QMLWRHLAYH DKLLDKVEDR SEPLDDDSDL EFELEAFPAA SAEAVSDATT CAKILISSGS  120
SRESGPISRT NLEASLTRNL PDNQTPHDPS DKQQLAHTAG GTNAVVPRSV QKQPLATKRS  180
AEVSDGNGSA GSGLRAKRRR QAWTKEEDME LIAAVQKCGE GNWSNILKGD FKHDRTASQL  240
SQRWATIQRR QANLNAGSSN KTVNSTRSEE RLAAQKAFSL AVDMPMTGSL SISAILSGST  300
QSNTPPSSAT LSASVSEALP ASVPLQASTQ ATSQKVASNT SNKPRTIPKK TTAPSKPSVG  360
PNPLIQAAAF AAGGRIATPS TAASLFKAAQ SKSAVHIRPG GCSSPKSPIM TAKSSPATNM  420
VGSQPPSVRY AQPAVTMPAP AVASSVLSST MPRHGMQQLQ VFSQRTTSNP LTSCAAVPNL  480
SAPPILSESK PPADSQEIAE SNSDIAFPVI PAIDVDELLA EEVKDADELE LDGAVAQNHQ  540
TELLSLDVGE NDNNIINNTA CGMQQAIAGG MDISKSQTDE NQTVTNKTVS PDTGAAENKA  600
MEIDVGGSQI PVEEGTKLAS NSQSLNVVSS HTQIVAQEQL AGTEAVVDEV KQSCIQVEQH  660
AVLEDIASDN KSSVDDEAGS GSKQD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010930864.10.0uncharacterized protein LOC105051919
TrEMBLA0A2H3XBV20.0A0A2H3XBV2_PHODC; uncharacterized protein LOC103701275
STRINGXP_008781504.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46843754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.12e-57MYB_related family protein