PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010930840.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | BES1 | ||||||||
Protein Properties | Length: 159aa MW: 18810.1 Da PI: 9.9436 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 146.2 | 2.8e-45 | 34 | 141 | 3 | 111 |
DUF822 3 sgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssas.aspesslqs 96 s r+p+++ErEnn++RERrRR++aa+i+aGLR++Gny+lp +aD+n+VlkALc+eAGw v++DGt yr + ++++++++ + + s ++l+ XP_010930840.1 34 SWRRPSERERENNRQRERRRRQVAARIFAGLRKHGNYELPRHADQNDVLKALCNEAGWHVDEDGTIYRSHLHHHNAMDHKSCTRGsGSNMTNLE- 127 779*******************************************************************999988887766554244445544. PP DUF822 97 slkssalaspvesys 111 l s + + +y+ XP_010930840.1 128 -LMSLQDHHLQLNYH 141 .44444433334444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 1.4E-38 | 35 | 114 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MEEERVVKRR GCIKRTRGPW LVRRQGRGGS VVTSWRRPSE RERENNRQRE RRRRQVAARI 60 FAGLRKHGNY ELPRHADQND VLKALCNEAG WHVDEDGTIY RSHLHHHNAM DHKSCTRGSG 120 SNMTNLELMS LQDHHLQLNY HIETKEEMKE DELSLDLTL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 7e-16 | 36 | 101 | 372 | 437 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 7e-16 | 36 | 101 | 372 | 437 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 7e-16 | 36 | 101 | 372 | 437 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 7e-16 | 36 | 101 | 372 | 437 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 4 | 9 | RVVKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009795965.1 | 3e-45 | PREDICTED: uncharacterized protein LOC104242587 | ||||
TrEMBL | A0A1U7YAZ7 | 8e-44 | A0A1U7YAZ7_NICSY; uncharacterized protein LOC104242587 | ||||
TrEMBL | A0A2G9GG18 | 4e-44 | A0A2G9GG18_9LAMI; Uncharacterized protein | ||||
STRING | XP_008786570.1 | 1e-50 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13201 | 30 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19350.6 | 5e-19 | BES1 family protein |