PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010930808.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 525aa MW: 53570.6 Da PI: 8.1805 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 131.4 | 8.6e-41 | 127 | 236 | 3 | 119 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaak 96 + k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ + s +ss+s + +a+ XP_010930808.1 127 ATKRSSKDRHTKVEGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNISLRSSGS--------SLSAP 213 689*****************************************************************99966666666666........33334 PP TCP 97 skksqksaasalnlakesrakar 119 ++ks ++ ++l+la+++r++ XP_010930808.1 214 PSKSAPHSFHTLALAHHHRQDYE 236 44444455557777777775544 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.1E-38 | 131 | 235 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.194 | 132 | 186 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0001047 | Molecular Function | core promoter binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 525 aa Download sequence Send to blast |
MERSDHRHGK GADGGGRAAG GGGGGPSNSN SSSGGTNSSR STSEQQQQQF HHQASSSGPS 60 SLDLVPFEGG APTGSFMGPI VHHHAGSARV DASLAISSSP TSKPDPTTPR PSSSSGPADP 120 SKKLPVATKR SSKDRHTKVE GRGRRIRMPA VCAARVFQLT RELGHKSDGE TIEWLLQQAE 180 PAIIAATGTG TIPANFSTLN ISLRSSGSSL SAPPSKSAPH SFHTLALAHH HRQDYEEGHD 240 AAAGISHSAM LGFHQLHHHH PAHQHHLLST DQMGTGLQSA GGSAGGGGGG GGGDSSADTY 300 LRKRFREDLF KEEQQQQQEG GGGGGAGPSS PSSASKDART GGLQSHQEPT ASAAGMARPS 360 GVLPATAMWA VAPNSGAGGA FWMLPVSGGP TAGPSEPSLW TFPASGHGQY RTGIPTAAAG 420 GTIQAPLQFM SRINIPGGLE SQGGRAVGAL PLGSMLLQQQ PGGGAAPQHL GLGISETNLG 480 MLAALNAYNR AGLTMSSEHH QSLDHHQAQQ RAADSGDDHH PTNSQ |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 14 | 22 | GGRAAGGGG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010930808.1 | 0.0 | transcription factor TCP8 | ||||
TrEMBL | A0A2H3XIA9 | 0.0 | A0A2H3XIA9_PHODC; transcription factor TCP8-like | ||||
STRING | XP_008784216.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4934 | 26 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G58100.1 | 4e-45 | TCP family protein |