PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010930674.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 746aa    MW: 82703.7 Da    PI: 6.0328
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010930674.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.43.8e-2170125156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     r+k +++t+eq++eLe+lF+ +++p+ ++r+eL++k+g++ +qVk+WFqNrR++ k
  XP_010930674.1  70 RKKYQRHTPEQIKELEALFRICPHPDDKQRKELSEKVGMEPQQVKFWFQNRRTQSK 125
                     7999*************************************************998 PP
2START153.71.5e-482684833206
                     HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
           START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                     a  a++el+ +a a+ep+W +      e++n+de+ + f+++ +      ++e+ r +++ + ++  lv ++++++ +W++ +     +a+ le 
  XP_010930674.1 268 AAVAMEELMVMAHADEPLWIRGLdgyyEILNEDEYARAFARGLGpklptLRTEVTRGTAIIFTTPLYLVDIIMNVS-KWSTFFSgivsSADCLEM 361
                     66789****************99999*************99888********************************.********9998888886 PP

                     ..ECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--S CS
           START  85 ..issg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkg 174
                       is g  g lql++ae+q++splvp R  vf+Ry+r++ +g wvivdvS ++ ++ +     +R +++pSg+li+++sng+sk+twvehv++++
  XP_010930674.1 362 pfISIGskGMLQLITAEFQVPSPLVPpRGCVFLRYCRKHAEGFWVIVDVSMNNHDNSE-----IRYRRRPSGCLIQELSNGYSKITWVEHVEVDD 451
                     44555577**********************************************9988.....8******************************* PP

                     SXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 175 rlphwllrslvksglaegaktwvatlqrqcek 206
                     + +h +++ +v+sgl +gak+w++tl+rqce+
  XP_010930674.1 452 SGVHDMYKAVVNSGLTFGAKRWLSTLERQCER 483
                     ******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-2055121IPR009057Homeodomain-like
SuperFamilySSF466892.55E-1959127IPR009057Homeodomain-like
PROSITE profilePS5007117.13567127IPR001356Homeobox domain
SMARTSM003899.0E-2069131IPR001356Homeobox domain
CDDcd000867.14E-1970128No hitNo description
PfamPF000461.5E-1870125IPR001356Homeobox domain
PROSITE patternPS000270102125IPR017970Homeobox, conserved site
PROSITE profilePS5084840.751257486IPR002913START domain
SuperFamilySSF559611.13E-31259485No hitNo description
SMARTSM002344.5E-36266483IPR002913START domain
CDDcd088751.79E-94266482No hitNo description
PfamPF018521.0E-39269483IPR002913START domain
Gene3DG3DSA:3.30.530.201.6E-6321483IPR023393START-like domain
SuperFamilySSF559611.36E-6500707No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 746 aa     Download sequence    Send to blast
MEFQGKWNMF HDQARAPQQN HDPQSFQITT GIEAPRLVDE EDHSANPQTE VPANASTGED  60
DQQRRAAPKR KKYQRHTPEQ IKELEALFRI CPHPDDKQRK ELSEKVGMEP QQVKFWFQNR  120
RTQSKNHRER DDNNKLRKEN EELRLENLRI KEALSNPCCQ NCGGPCVIGK MSMDEHRLRL  180
ENASLHAEIQ KVSVWISKHG DQPETPSTVL PEPEPSHQLV VSGVVTGTAT VPLYTMEAES  240
SRAAELRGPS VTVQSQAQMQ RPFFENLAAV AMEELMVMAH ADEPLWIRGL DGYYEILNED  300
EYARAFARGL GPKLPTLRTE VTRGTAIIFT TPLYLVDIIM NVSKWSTFFS GIVSSADCLE  360
MPFISIGSKG MLQLITAEFQ VPSPLVPPRG CVFLRYCRKH AEGFWVIVDV SMNNHDNSEI  420
RYRRRPSGCL IQELSNGYSK ITWVEHVEVD DSGVHDMYKA VVNSGLTFGA KRWLSTLERQ  480
CERLASISAI NNPRFGINAN PEGRKNILRL VERMVVGFCG GVSGSRAQGW SHISGIGAED  540
VKITAKRNTV ASGSPPGITV NASTSLWLPM PPGRIFHFLR TSRNEVFRAP SIWDVLANGA  600
TIEEACQIAN GREEGNCISI LSVRGPESPS HVMILQENCS HATGSYVIYA PIDIVALNAI  660
LTGQEADYVA LLPCGFTIFP DLPYGMQDGL VGEGGSGGSL LTVSFQILVD SNPDSNISAD  720
TIANLNALVT DTCDQIKSSL LANNAP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010930674.10.0homeobox-leucine zipper protein ROC2
TrEMBLA0A3Q0HQN50.0A0A3Q0HQN5_PHODC; homeobox-leucine zipper protein ROC7-like
STRINGXP_008812148.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3753923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2