PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010930647.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 322aa    MW: 36483.5 Da    PI: 8.9891
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010930647.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-171863147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l ++v+q+G+ +W++Ia+++  gR++k+c++rw++ 
   XP_010930647.1 18 RGHWRPGEDEKLRQLVEQYGPQNWNSIAEKLK-GRSGKSCRLRWFNQ 63
                     899****************************9.***********996 PP
2Myb_DNA-binding59.29.1e-1971114247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++T+eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ +
   XP_010930647.1  71 RPFTEEEEERLLTAHRIHGNK-WALIARLFP-GRTDNAVKNHWHVV 114
                      69*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.1671364IPR017930Myb domain
SuperFamilySSF466891.68E-2917111IPR009057Homeodomain-like
SMARTSM007173.5E-141766IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-271971IPR009057Homeodomain-like
PfamPF139217.3E-172181No hitNo description
CDDcd001677.67E-142162No hitNo description
PROSITE profilePS5129427.55365119IPR017930Myb domain
SMARTSM007171.9E-1669117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2172117IPR009057Homeodomain-like
CDDcd001674.90E-881115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MVSSSAATGT DDTKVCPRGH WRPGEDEKLR QLVEQYGPQN WNSIAEKLKG RSGKSCRLRW  60
FNQLDPRINK RPFTEEEEER LLTAHRIHGN KWALIARLFP GRTDNAVKNH WHVVMARRHR  120
ERSRLFVKRS CQDHILSSSD GTANALLTSF SGPPEGSNSR HLRPDSRRIF EFGSSTTDRI  180
AVSPSASSLS WAFSGSTNPS SRQILGFDRK NYYSPKYNYN VLESSRFHDQ SLGPYNYHMF  240
KSFNALCETD YKRVAPHFIR FSGTGDSCRS EVMTADELVS LGDSSARAMN HRADDNQQED  300
GDDSLACKDV PFIDFLGVGI TS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C7e-33181184104C-Myb DNA-Binding Domain
1msf_C7e-33181184104C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010930647.10.0transcription factor MYB3R-1
TrEMBLA0A2H3Y9661e-177A0A2H3Y966_PHODC; transcription factor MYB54-like
STRINGXP_008795321.11e-178(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.18e-68myb domain protein 52